Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 642,134 A→G 25.4% E275G (GAA→GGA)  ybdR → predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb642,1340AG25.4% 92.8 / 34.6 55E275G (GAA→GGA) ybdRpredicted oxidoreductase, Zn‑dependent and NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base A (19/22);  new base G (6/8);  total (25/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGCAGGTCACCGGGGCGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTATTGCGGCGG  >  W3110S.gb/642066‑642202
                                                                    |                                                                    
ggCAGGTCACCGGGGCGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGaaa                                                                    <  1:3420465/71‑1 (MQ=255)
 gCAGGTCACCGGGGCGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAAc                                                                   <  1:2406411/71‑1 (MQ=255)
        aCCGGGGCGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCt                                                             >  1:4608432/1‑70 (MQ=255)
           ggggCGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGAc                                                          >  1:1475637/1‑70 (MQ=255)
               cGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTa                                                        <  1:3154916/68‑1 (MQ=255)
                 tGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGGAACgg                                                                 <  1:227104/57‑1 (MQ=255)
                 tGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTaa                                                       <  1:806993/67‑1 (MQ=255)
                 tGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTa                                                        <  1:2897586/66‑1 (MQ=255)
                   gATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGGAACGGTg                                                               >  1:3799138/1‑57 (MQ=255)
                   gATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGGAACGGTg                                                               >  1:3568430/1‑57 (MQ=255)
                   gATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGa                                                  >  1:1953922/1‑70 (MQ=255)
                         gTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGa                                                  <  1:3656397/64‑1 (MQ=255)
                          tAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAAc                                                                   <  1:485192/46‑1 (MQ=255)
                          tAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAAc                                                                   <  1:2430743/46‑1 (MQ=255)
                          tAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAAc                                                                   <  1:2377453/46‑1 (MQ=255)
                          tAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACg                                                                  <  1:2048427/47‑1 (MQ=255)
                           aaTAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTg                                                               >  1:1954647/1‑49 (MQ=255)
                            aTAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCt                                                             >  1:3267482/1‑50 (MQ=255)
                             tAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGgc                                       <  1:3558765/71‑1 (MQ=255)
                               gACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGaa                                                                     <  1:492598/39‑1 (MQ=255)
                               gACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGa                                                           >  1:3292509/1‑49 (MQ=255)
                               gACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGgca                                      <  1:1761161/70‑1 (MQ=255)
                                aCGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGGAACGGTGCTGACTAACCTGaa                                                 <  1:728328/58‑1 (MQ=255)
                                aCGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGGAACGGTGCTGACTAACCTGaa                                                 <  1:774926/58‑1 (MQ=255)
                                aCGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGGAACGGTGCTGACTAACCTGaa                                                 <  1:3397807/58‑1 (MQ=255)
                                aCGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGgcag                                     >  1:1809718/1‑70 (MQ=255)
                                   ccGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCagcagc                                 <  1:3711100/71‑1 (MQ=255)
                                     gTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTg                                                               <  1:1233478/39‑1 (MQ=255)
                                        ggTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGa                                           >  1:2847389/1‑56 (MQ=255)
                                        ggTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTa                             >  1:3135718/1‑70 (MQ=255)
                                          ttttGAAGCGAAAGGCAGCACCACGGGAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAg                          <  1:3090476/71‑1 (MQ=255)
                                          ttttGAAGCGAAAGGCAGCACCACGGGAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCCGTAAAg                          <  1:3162752/71‑1 (MQ=255)
                                            ttGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCg                        >  1:45403/1‑71 (MQ=255)
                                                     aaGGCAGCACCACGGGAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAg               >  1:2057290/1‑71 (MQ=255)
                                                     aaGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCa                <  1:3370821/70‑1 (MQ=255)
                                                     aaGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAg               <  1:2166364/71‑1 (MQ=255)
                                                        gcagcaCCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAgtg             <  1:1693189/70‑1 (MQ=255)
                                                        gcagcaCCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAgtg             >  1:4218331/1‑70 (MQ=255)
                                                          agcaCCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTAt          <  1:2976459/71‑1 (MQ=255)
                                                           gcaCCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGc                         <  1:3584177/55‑1 (MQ=255)
                                                            caccacGGGAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCg                   <  1:4195342/60‑1 (MQ=255)
                                                             accacGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:193254/1‑55 (MQ=255)
                                                              ccacGGGAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTATTgcg      >  1:1222005/1‑71 (MQ=255)
                                                               cacGGGAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAgtg             <  1:2177522/63‑1 (MQ=255)
                                                                acGGGAACGGTGCTGACTAACCTGAAACTGGAGGgca                                      >  1:3754647/1‑37 (MQ=255)
                                                                acGGGAACGGTGCTGACTAACCTGAAACTGGAGGgca                                      >  1:2315515/1‑37 (MQ=255)
                                                                acGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:4243834/1‑52 (MQ=255)
                                                                acGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:2707866/1‑52 (MQ=255)
                                                                acGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:3208006/1‑52 (MQ=255)
                                                                acGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:509271/1‑52 (MQ=255)
                                                                 cGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:2382709/1‑51 (MQ=255)
                                                                 cGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGt                       >  1:3055588/1‑51 (MQ=255)
                                                                 cGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTATTgcggcg   >  1:2722032/1‑71 (MQ=255)
                                                                  ggAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTATTGcggcgg  <  1:2308609/71‑1 (MQ=255)
                                                                  ggAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTATTGcggcgg  <  1:1714572/71‑1 (MQ=255)
                                                                   gAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGt                              <  1:1422370/42‑1 (MQ=255)
                                                                   gAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGt                              <  1:1290756/42‑1 (MQ=255)
                                                                    |                                                                    
GGCAGGTCACCGGGGCGTGGATGCAGTAATAGACGCCGTCGGTTTTGAAGCGAAAGGCAGCACCACGGAAACGGTGCTGACTAACCTGAAACTGGAGGGCAGCAGCGGTAAAGCGTTGCGTCAGTGTATTGCGGCGG  >  W3110S.gb/642066‑642202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: