Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,303,633 G→T 100% Q246Y (CAG→TAT oppA → oligopeptide transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,303,6330GT100.0% 172.8 / NA 58Q246Y (CAG→TAToppAoligopeptide transporter subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (29/29);  total (29/29)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGA  >  W3110S.gb/1303570‑1303692
                                                               |                                                           
cgaacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCt                                                      <  1:2404984/71‑1 (MQ=255)
cgaacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCt                                                      <  1:4263134/71‑1 (MQ=255)
cgaacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCt                                                      <  1:4187154/71‑1 (MQ=255)
 gaacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTa                                                     <  1:1472899/71‑1 (MQ=255)
  aacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTAt                                                    <  1:2893083/71‑1 (MQ=255)
  aacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTAt                                                    >  1:3733261/1‑71 (MQ=255)
         cGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGc                                                >  1:2636362/1‑68 (MQ=255)
          gTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTa                                             <  1:3995821/70‑1 (MQ=255)
           ttCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTAtt                                           >  1:88677/1‑71 (MQ=255)
               tGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCtt                                       >  1:2523943/1‑71 (MQ=255)
                gAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCt                                        <  1:2857269/69‑1 (MQ=255)
                 aaCGCAGCCCGACCTACTGGATCAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTc                                      <  1:4206876/70‑1 (MQ=255)
                  aCGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTg                                    <  1:776315/71‑1 (MQ=255)
                    gCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGaa                                  <  1:1759119/71‑1 (MQ=255)
                       gCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGtt                               <  1:725050/71‑1 (MQ=255)
                          cGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                            <  1:3813091/71‑1 (MQ=255)
                          cGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                            <  1:4509445/71‑1 (MQ=255)
                            aCCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCt                                                      <  1:3408690/43‑1 (MQ=38)
                              cTACTGGAACAACGCGAAAACCGTTATTAACTATGTa                                                          <  1:4375466/37‑1 (MQ=37)
                               tACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTa                                             <  1:441314/49‑1 (MQ=39)
                               tACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTAt                                            >  1:423874/1‑50 (MQ=255)
                               tACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTAt                                            >  1:3530242/1‑50 (MQ=255)
                                aCTGGAACAACGCGAAAACCGTTATTAACTATGTTACCTATTTGCCTATTGCTTCTGAAGTTACCGATGt                       >  1:1127982/1‑70 (MQ=255)
                                aCTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTAt                                                    >  1:2514493/1‑41 (MQ=38)
                                aCTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTAt                                                    >  1:4232752/1‑41 (MQ=38)
                                 cTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTAt                                            >  1:156449/1‑48 (MQ=39)
                                 cTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCtt                                       >  1:546526/1‑53 (MQ=255)
                                   ggAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCt                                              >  1:3412651/1‑44 (MQ=38)
                                   ggAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAAc                   >  1:237576/1‑71 (MQ=255)
                                    gAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGcc                                               >  1:3417561/1‑42 (MQ=38)
                                    gAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAAcc                  <  1:3421885/71‑1 (MQ=255)
                                    gAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAAcc                  >  1:548573/1‑71 (MQ=255)
                                    gAACAACGCGAAAAACGTTATTAACTATTTAACCTATTTGCCTATTGATTCTGAAg                                 >  1:3240209/1‑56 (MQ=255)
                                     aacaacGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                            <  1:1900143/60‑1 (MQ=255)
                                      acaacGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGaa                                  >  1:1910573/1‑53 (MQ=255)
                                      acaacGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGc                <  1:2749710/71‑1 (MQ=255)
                                       caacGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCt               <  1:3930594/71‑1 (MQ=255)
                                        aacGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGt                                >  1:2530001/1‑53 (MQ=255)
                                         acGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTAc             >  1:1390207/1‑71 (MQ=255)
                                           gcgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg           >  1:738872/1‑71 (MQ=255)
                                           gcgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg           <  1:1392573/71‑1 (MQ=255)
                                           gcgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg           <  1:44976/71‑1 (MQ=255)
                                            cgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGt                                <  1:1859521/49‑1 (MQ=39)
                                             gAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTa         <  1:543692/71‑1 (MQ=255)
                                              aaaaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAg                                 >  1:1300540/1‑46 (MQ=39)
                                               aaaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTg                                    >  1:1957955/1‑42 (MQ=38)
                                               aaaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTg                                    >  1:744263/1‑42 (MQ=38)
                                               aaaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAgt       >  1:765040/1‑71 (MQ=255)
                                                aaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTg                                    <  1:1790564/41‑1 (MQ=38)
                                                aaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAgtg      >  1:4021272/1‑71 (MQ=255)
                                                 aCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGAt                         >  1:438298/1‑51 (MQ=255)
                                                   cGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAgtggt    >  1:615980/1‑70 (MQ=255)
                                                    gTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                            <  1:3843092/45‑1 (MQ=38)
                                                    gTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGa  <  1:2268251/71‑1 (MQ=255)
                                                    gTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGa  <  1:1385756/71‑1 (MQ=255)
                                                     ttattaACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGt          <  1:3927963/62‑1 (MQ=255)
                                                       attaACTATGTAACCTATTTGCCTATTGCTTCTGa                                   >  1:4490939/1‑35 (MQ=37)
                                                         taACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAgtggt    >  1:1915653/1‑64 (MQ=255)
                                                               |                                                           
CGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGA  >  W3110S.gb/1303570‑1303692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: