| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,526,310 | A→G | 11.5% | V462A (GTT→GCT) | ansP ← | L‑asparagine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,526,310 | 0 | A | G | 11.5% | 125.5 / 9.3 | 52 | V462A (GTT→GCT) | ansP | L‑asparagine transporter |
| Reads supporting (aligned to +/- strand): ref base A (23/23); new base G (3/3); total (26/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-01 | |||||||||||
CTCGACGACTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCGAACGC > W3110S.gb/1526246‑1526374 | cTCGACGACTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGc < 1:2376806/70‑1 (MQ=255)cTCGACGACTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGc < 1:2371456/70‑1 (MQ=255) gacgacTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCaa < 1:4167585/69‑1 (MQ=255) gacgacTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCaa < 1:2639503/69‑1 (MQ=255) gacTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATAc > 1:2534511/1‑71 (MQ=255) tGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGa > 1:3535792/1‑71 (MQ=255) gcgcAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATa < 1:4399684/71‑1 (MQ=255) cAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATc < 1:767212/71‑1 (MQ=255) gTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATc > 1:199117/1‑69 (MQ=255) tGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAGCCAGCAAAATACCGATAATCGGc < 1:1895952/71‑1 (MQ=255) tGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGc < 1:3738566/71‑1 (MQ=255) gCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATaa > 1:1627442/1‑65 (MQ=255) cTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCATCAAAATACCGATAATCGCCAg > 1:3724522/1‑71 (MQ=255) cTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCaaaa > 1:3602060/1‑55 (MQ=255) cTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAg > 1:1259553/1‑71 (MQ=255) tgAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAgcgc < 1:1745506/71‑1 (MQ=255) tgAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAgcg < 1:41935/70‑1 (MQ=255) gAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATaa > 1:3903760/1‑42 (MQ=255) gAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCa > 1:2832753/1‑48 (MQ=255) aaTTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAAc > 1:1024779/1‑42 (MQ=255) aTTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATa > 1:3611018/1‑51 (MQ=255) tttCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAAt > 1:4271757/1‑58 (MQ=255) tCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAGCCAGCAAAATACCGATAATCGGCAGCGCCGCGa > 1:2956384/1‑70 (MQ=255) tCACCAACGCCTTTGCGCACACCAAACCAGCCTATAGCCAGCAAAATACCGATAATCGGCAGCGCCGCGa > 1:1645804/1‑70 (MQ=255) cAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGt > 1:1363973/1‑70 (MQ=255) cgcgTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATaa < 1:4086933/71‑1 (MQ=255) cgTTTGCGCACACCAAACCAGCCTATAGCCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGt > 1:3435812/1‑71 (MQ=255) cgTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGt < 1:1454081/71‑1 (MQ=255) tttGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCgg < 1:4487391/48‑1 (MQ=255) tttGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCgg < 1:4098599/48‑1 (MQ=255) ttGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTccc > 1:3192548/1‑71 (MQ=255) tGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAg > 1:2652847/1‑49 (MQ=255) tGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCg > 1:4038246/1‑71 (MQ=255) gcACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTc < 1:3283263/71‑1 (MQ=255) acacCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGt > 1:4254635/1‑56 (MQ=255) cacCAAACCAGCCTATAGCCAGCAAAATACCGATaa < 1:1955202/36‑1 (MQ=255) cacCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGtata < 1:1079931/58‑1 (MQ=255) ccAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGcgccg > 1:3572102/1‑46 (MQ=255) ccAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGcgccg > 1:1618335/1‑46 (MQ=255) ccAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATACTATaa > 1:723528/1‑57 (MQ=255) aaCCAGCCTATAACCAGCAAAATACCGATAATCGGCAg > 1:856129/1‑38 (MQ=255) aaCCAGCCTATAACCAGCAAAATACCGATAATCGGCAGcgccgc < 1:2568589/44‑1 (MQ=255) aCCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCg < 1:3838802/71‑1 (MQ=255) cAGCCTATAGCCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCGaa < 1:1362810/71‑1 (MQ=255) cAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATa > 1:689001/1‑45 (MQ=255) ccTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCGAACGc > 1:411392/1‑71 (MQ=255) ccTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCGAACGc > 1:3218010/1‑71 (MQ=255) tataACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGt < 1:1683956/42‑1 (MQ=255) tataACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGt < 1:1673985/42‑1 (MQ=255) ataACCAGCAAAATACCGATAATCGGCAGcgccgc < 1:491712/35‑1 (MQ=255) ataACCAGCAAAATACCGATAATCGGCAGcgccgc < 1:496164/35‑1 (MQ=255) ataACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGtat < 1:710389/43‑1 (MQ=255) taACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCg < 1:3281253/62‑1 (MQ=255) | CTCGACGACTGGCGCAGTGCTGTGAATTTCAGCAACGCGTTTGCGCACACCAAACCAGCCTATAACCAGCAAAATACCGATAATCGGCAGCGCCGCGATAGTATAAGTCCCGTTCGGGTAATCGAACGC > W3110S.gb/1526246‑1526374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |