| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 46 (1.310) | 482 (17.260) +CGCGTACAACT |
37/86 | NT | 92.3% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 56 (1.590) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 599 total aligned reads displayed.
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACC > W3110S.gb/236044‑236111 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGAC > 1:2103060/1‑71 ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGC < 1:916965/71‑1 ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGC < 1:2940265/71‑1 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGC < 1:439174/70‑1 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTA < 1:2258607/71‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACT > 1:3278846/1‑71 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACT > 1:1456976/1‑71 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCA < 1:2450973/71‑1 CTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCT < 1:1026401/71‑1 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:1946297/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:1741831/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:2144709/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCT > 1:2854389/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:2538863/1‑71 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACA > 1:2739864/1‑67 TTTTAACGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA > 1:1240765/1‑70 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:1210450/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2047931/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2804628/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:869903/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGT > 1:714478/1‑61 TTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:3043001/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:810862/69‑1 TTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:3137974/1‑57 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:163970/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3262726/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2024755/71‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:1572900/71‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:3336716/71‑1 AACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:2509503/64‑1 AACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:2206493/64‑1 AACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:1593562/64‑1 ACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:666004/1‑71 ACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:2483379/1‑71 ACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1693606/68‑1 CTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:113336/1‑68 CTCTACTGTTTCTCCATACCCGTTTTTTTTGGACG < 1:338833/35‑1 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1285612/71‑1 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:2658260/1‑71 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:655909/1‑71 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:1168126/1‑71 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:1899863/1‑71 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:545150/1‑61 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:1299510/1‑61 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:574314/1‑61 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:1367872/1‑61 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:1405868/1‑61 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG > 1:690346/1‑60 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1775575/69‑1 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:393618/69‑1 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:61726/69‑1 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2902409/54‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2577695/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1093701/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2371740/68‑1 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTG > 1:84385/1‑71 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTG > 1:187086/1‑71 TGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGC < 1:1324661/66‑1 TTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:1002016/1‑71 TCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:1826005/47‑1 CATACCCGTTTTTTTTGGTCGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:3084337/58‑1 CATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:2700267/1‑54 CATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:529266/1‑54 CATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:3294531/1‑53 CATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:2834251/1‑53 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA < 1:2276040/64‑1 TACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA < 1:2462055/64‑1 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGt > 1:1989607/1‑70 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2328482/1‑71 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:11780/1‑71 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:2626001/55‑1 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1043891/49‑1 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1673617/49‑1 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1436081/49‑1 ACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:13486/1‑70 ACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:2189124/1‑67 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3125494/1‑69 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2348608/1‑69 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:1957943/1‑69 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:2425126/1‑69 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA > 1:504456/1‑64 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA > 1:3178181/1‑64 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:3220515/1‑55 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:3006995/1‑49 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:2167000/47‑1 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGCCCGCTATG > 1:2399449/1‑46 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG > 1:1648165/1‑71 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATC < 1:48176/70‑1 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATC > 1:297692/1‑70 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATC < 1:1479941/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1909139/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:1617188/1‑43 TTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAC < 1:2296831/60‑1 TTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT < 1:2559439/70‑1 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:1804739/71‑2 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:959166/70‑2 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1560307/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:970910/1‑71 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACC < 1:1546856/71‑1 TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC < 1:2766183/68‑1 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACC > W3110S.gb/236044‑236111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |