| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 205097 = | 23 (0.650) | 10 (0.330) +TTATAACA |
4/92 | NT | 30.4% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | = 467579 | 31 (0.880) | intergenic (+125/‑28) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator | |||||
ACATCTTCAGATTCCGGTTTACTTAATCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/205129‑205097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTAATTTTATTTT < W3110S.gb/467579‑467565 |||||||| tCATCTTCAGATTCCGGTTTACTTAATCTCGACTTATAACA < 1:1394529/40‑1 CAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT > 1:2599325/1‑49 CAGATTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT > 1:3079487/1‑49 TTCCGGTTTACTTAATCTCGACTTATAACATTTTAATTT < 1:2785243/39‑1 TCCGGTTTACTTAATCTCGACTTATAACATTTTAATTTTATTT > 1:2529150/1‑43 TCCGGTTTACTTAATCTAGACTTATAACATTTTAA > 1:2730008/1‑35 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT < 1:1265784/40‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT < 1:126923/40‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT < 1:1923230/40‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT < 1:2522092/40‑1 GTTTACTTAATCTCGACTTATAACATTTTAATTTTATTTT < 1:550696/40‑1 |||||||| ACATCTTCAGATTCCGGTTTACTTAATCTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/205129‑205097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTAATTTTATTTT < W3110S.gb/467579‑467565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |