BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	W3110S.gb	3,746,913	Δ1,199 bp	100%		[tnaB]–[tnaB]	[tnaB], insH, [tnaB]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3746913–3748106	3748111	6–1199	90 [0]	[0] 90	[tnaB]–[tnaB]	[tnaB],insH,[tnaB]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3746912	0 (0.000)	69 (2.120)	7/100	NT	100%	coding (71/447 nt)	tnaB	tryptophan transporter of low affinity
*	?	W3110S.gb	3748112 =	0 (0.000)	69 (2.120)	7/100	NT	100%	coding (871/984 nt)	tnaB	tryptophan transporter of low affinity

Only 100 of 102 total aligned reads displayed.

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3746840‑3746912

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  >  W3110S.gb/3748112‑3748167

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:2708132/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:2635361/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:1734728/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:2283041/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:1381976/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:2092785/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:1349279/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:1008019/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:1151206/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:1982913/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:3183008/1‑70

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                             >  1:581439/1‑70

    ACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                        <  1:436455/71‑1

    ACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                        <  1:514473/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTTGAGAA                                                      <  1:1130437/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2087009/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:3220892/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2325413/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2815291/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:575289/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:1606176/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:1352100/71‑1

      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:524880/71‑1

       GGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGACCTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2335447/70‑1

       GGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:518713/70‑1

       GGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2545195/70‑1

       GGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:1040227/70‑1

       GGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2012786/70‑1

        GTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAA                                                      <  1:2327541/69‑1

         TCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                    >  1:2605016/1‑70

         TCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                    >  1:1494014/1‑70

         TCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                    >  1:258992/1‑70

         TCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGCCAACAGCTAAGTTAGAGAACA                                                    >  1:2032670/1‑70

         TCCGCCAGATAATCGAACAACCCCAGCCTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                    >  1:181999/1‑70

         TCCGCCAGATAATCGAACAACCACAGCGTGACCCCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                    >  1:1125512/1‑70

                  TAATCGAACAA‑CCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                         <  1:3335327/71‑1

                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                         <  1:877212/70‑1

                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                         <  1:528817/70‑1

                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                         <  1:545091/70‑1

                     TCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAA                                       >  1:2912756/1‑71

                     TCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAA                                       >  1:412874/1‑71

                           AACCCCCGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2030181/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:3297052/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:192525/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2142412/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2196857/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1875849/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:419098/71‑1

                           AACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1667950/71‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTTGAT                                 <  1:55430/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2642805/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:460049/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2521132/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1467881/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1951047/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:106236/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1982585/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1992384/64‑1

                                  GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTT‑‑AGAACACCATCAGGCAAAACTCGAT                                 <  1:637961/62‑1

                                       ACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:816844/70‑1

                                       ACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:45376/70‑1

                                       ACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:3270281/70‑1

                                       ACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:2391335/70‑1

                                       ACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:2282448/70‑1

                                       ACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:2068127/70‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTTGAT                                 <  1:727667/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2908246/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1428768/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1716921/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:33003/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2682957/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:744623/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:1038981/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:3141785/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:3073558/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:3070027/56‑1

                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:2065710/56‑1

                                              AGAACGAACTGGCAACAGCTAAGTTAGAGAACACC                                                  <  1:2383364/35‑1

                                              AGAACGAACTGGCAACAGCTAAGTTAGAGAACACC                                                  <  1:204276/35‑1

                                                  CGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:1748083/59‑1

                                                    AACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                 <  1:3102282/46‑1

                                                          CAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:2009067/71‑1

                                                          CAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:3188047/71‑1

                                                          CAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:1151452/71‑1

                                                          CAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTCTTTGGTGCCGAGGAACGAT  <  1:3169491/71‑1

                                                           AACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:581520/70‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCATAACTCGAT                                 <  1:1159809/35‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:256780/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:1461349/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:1623814/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:1913101/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:3147167/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:3036493/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:2744337/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:2702186/66‑1

                                                               GCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCT                      <  1:103597/46‑1

                                                               GCTAAGTT‑‑AGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:3116389/64‑1

                                                                CTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:3301933/65‑1

                                                                 TAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  <  1:1761850/64‑1

                                                                       AGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGATCGAT  <  1:2586590/58‑1

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3746840‑3746912

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT  >  W3110S.gb/3748112‑3748167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.