| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3748799 = | 1 (0.030) | 33 (0.940) | 8/108 | NT | 97.1% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
TTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748865‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > W3110S.gb/4056222‑4056284 TTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT < 1:1940387/70‑1TTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT < 1:1533381/70‑1TTCTGGGGGGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGT < 1:1066751/70‑1 GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:2289082/68‑1 GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:3097011/68‑1 GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:2669278/68‑1 GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:1646224/68‑1 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAA > 1:1853142/1‑71 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAA > 1:407139/1‑71 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAA > 1:2242494/1‑71 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAA > 1:2581647/1‑71 CCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCA > 1:221899/1‑70 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:797796/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:787710/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:1898715/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:656933/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:352207/1‑71 TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTACGGGTTATTGTTATTAGGGTAATGACTCCAACTTA > 1:1242789/1‑71 TCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAG < 1:2777011/70‑1 CTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT < 1:314135/44‑1 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT > 1:22972/1‑38 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT > 1:978651/1‑38 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT > 1:913183/1‑38 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT > 1:2180863/1‑38 TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT > 1:2268680/1‑38 TTCAATGCTTCATTCAGGGTTATTGTTATTAGGGTAAT > 1:2872989/1‑38 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC < 1:1145228/39‑1 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC < 1:370013/39‑1 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC < 1:1181532/39‑1 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC < 1:1192324/39‑1 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC < 1:1306097/39‑1 TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCC < 1:2378844/39‑1 CATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC < 1:1007214/69‑1 GTTATTAGGGTAATGACTCCAACTTATTGATAGAGTTTTATGTTCAGATAATGCCCTATGACTTTGTCATG > 1:2249742/1‑71 GTTATTAGGGTAATGACTCCAACTTATTGATAGAGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:1114352/1‑71 GTTATTAGGGTAATGACTCCAACTTATTGATAGAGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > 1:935187/1‑71 TTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3748865‑3748799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG > W3110S.gb/4056222‑4056284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |