Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 4,310,365 Δ1,199 bp 100% insH[alsK] insH, [alsK]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 4310365–4311558 4311563 6–1199 52 [0] [0] 54 insH–[alsK] insH,[alsK]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 43103640 (0.000)45 (1.380) 5/100 NT 100% intergenic (‑286/‑69) yjcS/insH predicted alkyl sulfatase/IS5 element protein
?W3110S.gb 4311564 = 0 (0.000)coding (916/1029 nt) alsK D‑allose kinase

TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/4310298‑4310364
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  >  W3110S.gb/4311564‑4311597
                                                                                                     
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA                                  >  1:77489/1‑69
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA                                  >  1:1932774/1‑69
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA                                  >  1:176401/1‑69
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA                                  >  1:2272675/1‑69
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA                                  >  1:2536607/1‑69
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA                                  >  1:1471117/1‑69
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGC                                   >  1:1077109/1‑68
        GTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTG                        >  1:2442659/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:2407779/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:1930415/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:1698966/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:1598624/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:230992/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:1485409/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT            >  1:2588577/1‑71
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT             >  1:1137316/1‑70
                    GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACT                           >  1:1196049/1‑56
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:955689/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:2865635/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:394305/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:2223164/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:633950/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:2016983/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:1247695/1‑58
                              GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC               >  1:1328870/1‑58
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:218945/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:1106566/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:869372/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:2337182/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:770676/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:1415275/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:2418055/48‑1
                                                     TCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:1096806/48‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:2824642/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:642397/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:1963430/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:2378603/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:1520502/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:795018/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:176507/45‑1
                                                        TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  <  1:2173009/45‑1
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:1260197/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:2747386/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:2743657/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:2666611/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:1264091/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:2471729/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA          >  1:1746163/1‑36
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG           >  1:1250136/1‑35
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG           >  1:359765/1‑35
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG           >  1:2299974/1‑35
                                                         GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG           >  1:1050521/1‑35
                                                                                                     
TTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/4310298‑4310364
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA  >  W3110S.gb/4311564‑4311597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.