| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 13 (0.370) | 206 (11.910) +TTTAATATCAGTAAACCGGACATAACC |
26/54 | NT | 94.8% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 33 (0.940) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 572 total aligned reads displayed.
AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124435‑4124574 | ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:3079828‑M2/70‑71 (MQ=255)ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:2330033‑M2/70‑71 (MQ=255)ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCa > 1:1928333‑M2/70‑71 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg > 1:269694‑M2/67‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaatccggacataaccCATgaag > 1:85875‑M2/64‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag > 1:1483871‑M2/64‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag > 1:608532‑M2/64‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaag > 1:2211296‑M2/64‑70 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaa < 1:2474825‑M2/11‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:1962186‑M2/60‑71 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa > 1:276580/1‑71 (MQ=255) aggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:2636172‑M2/56‑71 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt > 1:937503‑M2/49‑71 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:199222‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2860587‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:3204021‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:31814‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1797403‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2494185‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:776666‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:815736‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1239874‑M2/25‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1608724‑M2/25‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:45581‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:705446‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3337508‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3357156‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:3314635‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:2790921‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1133237‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGAGCTTTTTTg > 1:728232‑M2/45‑69 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1514291‑M2/26‑1 (MQ=255) tggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTg < 1:417854‑M2/30‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:1982058‑M2/31‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:1457209‑M2/31‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1171452‑M2/34‑1 (MQ=255) gcgagcataatttaatatcagtaaacccgacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:954350‑M2/38‑69 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:569749‑M2/37‑71 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:2531219‑M2/33‑59 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:302582‑M2/40‑1 (MQ=255) acaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:2960383/71‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:127704‑M2/25‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:657428‑M2/40‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2023873‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2932413‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2435105‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2092727‑M2/29‑71 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGTggcatga < 1:1594902‑M2/44‑4 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:506173‑M2/43‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:528448‑M2/44‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGTggcatga < 1:1102925‑M2/44‑4 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:310718‑M2/26‑71 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:1847360‑M2/26‑71 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt > 1:2978161‑M2/26‑71 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAt < 1:2564106‑M2/46‑1 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:2943019‑M2/47‑1 (MQ=255) gaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATccc > 1:903067/1‑71 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATcgc < 1:3267911‑M2/16‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:1066559‑M2/21‑55 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcccc > 1:2998498‑M2/21‑70 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:2663722‑M2/21‑71 (MQ=255) attaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:3055925‑M2/19‑71 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:2884321‑M2/19‑53 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:1690372‑M2/19‑53 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:2745531‑M2/19‑53 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:36405‑M2/19‑71 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGc > 1:2411563‑M2/19‑71 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1021906‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2394895‑M2/25‑1 (MQ=255) taaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg < 1:2064383‑M2/52‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2379801‑M2/15‑42 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:1212749‑M2/15‑42 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:1297978‑M2/15‑42 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg < 1:1538911‑M2/52‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:915812‑M2/15‑71 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:2817424‑M2/15‑71 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:3153857‑M2/31‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:2257605‑M2/58‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:1636816‑M2/58‑1 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat < 1:188730‑M2/58‑1 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:486471/1‑71 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:582481/1‑71 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa > 1:3222212‑M2/13‑39 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTAGGCAGGGGGCAAGt < 1:76473‑M2/44‑1 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:1550796‑M2/31‑1 (MQ=255) ggacataaccAATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:2728456‑M2/47‑1 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:2131559‑M2/47‑1 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATAtt > 1:1378634‑M2/7‑70 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:893981‑M2/65‑1 (MQ=255) taaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa < 1:381021‑M2/42‑1 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:2171379‑M2/4‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:689864‑M2/4‑71 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg < 1:2891372‑M2/70‑1 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg < 1:1404733‑M2/70‑1 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg < 1:1417110‑M2/70‑1 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg < 1:1722095‑M2/70‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGc < 1:2295883/71‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGc < 1:2359875/71‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGc < 1:2595056/71‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCACTGCTTGATGATATTAAACGGc < 1:1341772/71‑1 (MQ=255) | AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGGC > W3110S.gb/4124435‑4124574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |