| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 39 (1.150) | 10/104 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
ACCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932862‑3932998 | tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaa < 1:599601‑M2/2‑2 (MQ=255)tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGt < 1:1237548‑M2/3‑1 (MQ=255)tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGt < 1:2371194‑M2/3‑1 (MQ=255)tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGt < 1:1629203‑M2/3‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:2705592‑M2/5‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:2629752‑M2/5‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:178336‑M2/5‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:32510‑M2/5‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:2325593‑M2/5‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:3189524‑M2/5‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:2054046‑M2/5‑1 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:1349710‑M2/64‑71 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:1371924‑M2/64‑71 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:1936402‑M2/64‑71 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTgtga < 1:667548/70‑4 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTgtga < 1:1792564/70‑4 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTgtga < 1:211074/70‑4 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTgtga < 1:2440981/70‑4 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTgtga < 1:357953/70‑4 (MQ=255) agtcacctctgactgagagtttactcacttagcctcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2981780‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtctactattgctgggtaagatcaAGtgattaa < 1:2985500‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgtgtaagatcaAGtgattat < 1:1563695‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:268863‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2805291‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:340144‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:1614688‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:212606‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:789644‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:3214226‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:1353293‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:3325361‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:452828‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:721554‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2563619‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtctccactattgctgggtaagatcaAGtgattaa < 1:1040824‑M2/9‑4 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2973343‑M2/9‑4 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:2922906‑M2/59‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:2935078‑M2/59‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:2872030‑M2/59‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:3137070‑M2/59‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGc > 1:1105241‑M2/59‑71 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCACGGGc > 1:984518‑M2/59‑71 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg > 1:3215493‑M2/58‑59 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg > 1:85759‑M2/58‑59 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg > 1:2274934‑M2/58‑59 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg > 1:2677827‑M2/58‑59 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg > 1:326099‑M2/58‑59 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGcc > 1:396254‑M2/58‑71 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAg > 1:1354172‑M2/51‑52 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:1942887‑M2/51‑70 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:1812423‑M2/51‑70 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:3329801‑M2/51‑70 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:866545‑M2/51‑70 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg > 1:822581/1‑38 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGt > 1:479841‑M2/37‑39 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:1649423‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:130185‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:1251768‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:400538‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:1314587‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:1836712‑M2/46‑1 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:2874075‑M2/46‑1 (MQ=255) gtgtccactattgctgagtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:796119‑M2/46‑1 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:2952039‑M2/46‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:1723983‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:2025919‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:523217‑M2/23‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:745326‑M2/23‑70 (MQ=255) tccactattgctgggtagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa > 1:2753080‑M2/22‑71 (MQ=255) ttgctggttaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:1180093‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:3092943‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:3065109‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:289840‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:2308559‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:15201‑M2/56‑1 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc < 1:338098‑M2/62‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt < 1:2673140‑M2/46‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:780622‑M2/8‑71 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:2501611‑M2/8‑71 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:1092402‑M2/8‑71 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:2883029‑M2/6‑71 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:3333544‑M2/2‑70 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:2596787‑M2/2‑70 (MQ=255) | ACCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932862‑3932998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |