Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,082 T→C 92.1% I232I (ATT→ATC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,0820TC92.1% 1986.8 / 103.8 634I232I (ATT→ATCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (5/45);  new base C (204/378);  total (209/425)
Fisher's exact test for biased strand distribution p-value = 1.33e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01

Only 100 of 639 total aligned reads displayed.

GTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGT  >  W3110S.gb/71015‑71144
                                                                   |                                                              
gTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             <  1:1688990/71‑2 (MQ=255)
gTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             <  1:366805/71‑2 (MQ=255)
 tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             >  1:2480538/1‑69 (MQ=255)
 tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             >  1:700118/1‑69 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                       >  1:1743714/1‑70 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                       >  1:2785728/1‑70 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                      <  1:1333726/71‑1 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                      <  1:1564374/71‑1 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                      <  1:581625/71‑1 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                      <  1:851234/71‑1 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCAtt                                                                >  1:2820425/1‑61 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGa                                                      <  1:2983134/71‑1 (MQ=255)
        caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                     <  1:2562503/71‑1 (MQ=255)
        caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                     <  1:1177204/71‑1 (MQ=255)
        caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                     <  1:554840/71‑1 (MQ=255)
        caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                     <  1:184700/71‑1 (MQ=255)
          tCTTTTACGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                    >  1:3238646/1‑70 (MQ=255)
            ttttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctg                                                 >  1:2066710/1‑71 (MQ=255)
              ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                               >  1:235275/1‑71 (MQ=255)
              ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                               >  1:1614053/1‑71 (MQ=255)
              ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                               >  1:2183358/1‑71 (MQ=255)
               tCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                               <  1:1544052/70‑1 (MQ=255)
                ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                               <  1:881854/69‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTTCTTTTg                                           <  1:2935490/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                           <  1:336909/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                           <  1:931038/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                           <  1:305653/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                           <  1:2963345/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                           <  1:145982/71‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgct                                               <  1:411360/66‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgct                                               <  1:3082475/66‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgct                                               <  1:1349291/66‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgctgct                                               <  1:2746955/66‑1 (MQ=255)
                    cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                         <  1:721641/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                      <  1:3330802/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                      <  1:3135578/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                      <  1:3262697/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                      <  1:2766575/71‑1 (MQ=255)
                         gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             <  1:1658169/46‑2 (MQ=255)
                         gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             <  1:783913/46‑2 (MQ=255)
                         gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             <  1:1789838/46‑2 (MQ=255)
                         gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                             <  1:529559/46‑2 (MQ=255)
                          ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGc                                        <  1:2584633/66‑1 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                 >  1:2373435/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                 >  1:3152465/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                 >  1:1143852/1‑71 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:2308232/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:1090640/71‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                              >  1:124260/1‑70 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             >  1:490983/1‑71 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             <  1:3097809/71‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             <  1:1444780/71‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             <  1:2436555/71‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             <  1:1506289/71‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             <  1:2127561/71‑1 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                             <  1:2000844/71‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAgg                                                         >  1:3042687/1‑42 (MQ=37)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                      <  1:2019256/45‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:670379/67‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:629145/67‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:471538/67‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:105590/67‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:1918864/67‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:214496/67‑1 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                              >  1:1943677/1‑69 (MQ=255)
                                 ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg                            >  1:1422385/1‑71 (MQ=255)
                                  tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                <  1:1009815/66‑1 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                          >  1:182875/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                          >  1:1207437/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                          >  1:302315/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                          >  1:2852562/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCttt                                             <  1:2713777/52‑1 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCt                         <  1:1974923/71‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                    >  1:2412608/1‑41 (MQ=37)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                             <  1:759913/48‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                             <  1:1707076/48‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                      >  1:3204004/1‑71 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                      >  1:2607679/1‑71 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                      >  1:2680803/1‑71 (MQ=255)
                                         ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                >  1:2455586/1‑43 (MQ=37)
                                         ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                >  1:1316163/1‑43 (MQ=37)
                                         ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                              >  1:158741/1‑61 (MQ=255)
                                           aaGCTGGCTCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                  >  1:288894/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcg                          >  1:2521960/1‑62 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                  >  1:95817/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                  >  1:1879328/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                  >  1:2241539/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                  >  1:2266857/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                  >  1:2629790/1‑71 (MQ=255)
                                                   gcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGTATGCCTATCGCCACCgtcgg           >  1:444297/1‑70 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:1756644/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:606597/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:662022/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:2047760/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:1375391/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:3302493/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:803893/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc       <  1:1269052/71‑1 (MQ=255)
                                                        gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCaa     <  1:390847/71‑1 (MQ=255)
                                                        gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCaa     <  1:2337215/71‑1 (MQ=255)
                                                                   |                                                              
GTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGT  >  W3110S.gb/71015‑71144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: