Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 4,371,273 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb4,371,2730A.100.0% 128.9 / NA 33intergenic (‑6/+300)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (10/23);  total (10/23)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
*W3110S.gb4,371,2740A.100.0% 128.9 / NA 33intergenic (‑7/+299)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (10/23);  total (10/23)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GGGTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGAAAAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTT  >  W3110S.gb/4371203‑4371335
                                                                      ||                                                             
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                <  1:3921221/71‑1 (MQ=255)
 ggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaa                                                               <  1:2747869/71‑1 (MQ=255)
             gcagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                <  1:478548/58‑1 (MQ=255)
             gcagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGAt                                                  <  1:2356462/70‑1 (MQ=255)
             gcagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATa                                                 <  1:1240715/71‑1 (MQ=255)
              cagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATa                                                 <  1:130404/70‑1 (MQ=255)
                         tctgATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGAt                                      <  1:33838/70‑1 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATg                                  >  1:3228293/1‑70 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATg                                  >  1:1621348/1‑70 (MQ=255)
                              tgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATgg                                 <  1:1820797/70‑1 (MQ=255)
                              tgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGga                                <  1:2508269/71‑1 (MQ=255)
                                 aCCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:1168028/71‑1 (MQ=255)
                                 aCCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:2347411/71‑1 (MQ=255)
                                      aTAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    <  1:1066369/59‑1 (MQ=255)
                                      aTAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    <  1:230732/59‑1 (MQ=255)
                                      aTAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    <  1:455407/59‑1 (MQ=255)
                                       tAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACa                         >  1:3831795/1‑69 (MQ=255)
                                        aGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATggg                                >  1:3721769/1‑60 (MQ=255)
                                          tCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:280856/62‑1 (MQ=255)
                                          tCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:963069/62‑1 (MQ=255)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                  >  1:3974701/1‑71 (MQ=255)
                                             aGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACgg                 <  1:3212867/71‑1 (MQ=255)
                                                      gCAACCTGCATGGCAG‑‑AAATAGCGTCGATAACCGCCATGATAATGgag                               <  1:3408846/48‑1 (MQ=37)
                                                      gCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGgag                               <  1:1250580/48‑1 (MQ=37)
                                                      gCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTAcc        <  1:1146469/71‑1 (MQ=255)
                                                        aaCCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             >  1:1562986/1‑48 (MQ=38)
                                                        aaCCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGa               >  1:2227288/1‑62 (MQ=255)
                                                        aaCCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGAt              >  1:990594/1‑63 (MQ=255)
                                                        aaCCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCgg      >  1:3934410/1‑71 (MQ=255)
                                                          ccTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                  <  1:2421611/57‑1 (MQ=255)
                                                          ccTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                  <  1:1253654/57‑1 (MQ=255)
                                                           cTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                  <  1:235942/56‑1 (MQ=255)
                                                             gCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGttt  >  1:1243813/1‑70 (MQ=255)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGttt  <  1:3467015/69‑1 (MQ=255)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGttt  <  1:130488/69‑1 (MQ=255)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGttt  <  1:594517/69‑1 (MQ=255)
                                                                      ||                                                             
GGGTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGAAAAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTT  >  W3110S.gb/4371203‑4371335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: