| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 15 (0.360) | 120 (6.370) +TTTAATATCAGTAAACCGGACATAACC |
31/46 | NT | 86.4% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 69 (1.640) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 427 total aligned reads displayed.
ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236730‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124504‑4124573 ||||||||||||||||||||||||||| ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT > 1:3517787/1‑71 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT > 1:350464/1‑70 TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT > 1:1401557/1‑70 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:110329/1‑71 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA < 1:2356733/70‑1 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA > 1:1560005/1‑70 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGG‑GGAAGTTGCCTCTGGCGAGCATAATTTAA < 1:174566/70‑1 ATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCA < 1:935244/69‑1 ATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA > 1:47328/1‑66 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:1817511/71‑1 GAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:1005040/1‑62 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA > 1:2228912/1‑71 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA > 1:3170337/1‑71 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA > 1:2956489/1‑71 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA < 1:3199101/70‑1 AAGCCCGTCTCGATCTGCTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAT > 1:1354226/1‑57 CCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG > 1:428083/1‑71 CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG > 1:381076/1‑70 TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA < 1:3307190/54‑1 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAACCCGGACAT > 1:830256/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:3424823/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:3788202/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG < 1:2391416/65‑1 TCGATCTGGTGCAGAAGAAAGGAGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:224568/1‑70 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT < 1:1899332/68‑1 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT > 1:1985727/1‑53 ATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC > 1:2599672/1‑71 ATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:2736455/47‑1 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:1159233/1‑47 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAAC < 1:1276743/65‑1 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAAC < 1:2332508/65‑1 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA < 1:2615327/44‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:2979185/71‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:3732091/71‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:1192700/42‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:2714877/1‑39 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA > 1:978988/1‑70 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT > 1:3442778/1‑71 GAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG < 1:900898/41‑1 AGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT > 1:3283402/1‑71 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:691787/71‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:2786503/71‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:726839/71‑1 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:858334/1‑70 GCCTCTGGCGAGGATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT > 1:3928153/1‑57 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:592750/70‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:2115980/70‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:2083582/70‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:1928860/70‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:149871/70‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:1532177/1‑69 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:1076262/1‑69 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:3247680/1‑69 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA > 1:2045145/1‑56 CCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA < 1:660362/70‑1 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT < 1:505545/71‑1 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:3133575/1‑71 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG < 1:624879/69‑1 CGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA < 1:402226/47‑1 GCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCTCGCTTTTTTGAAGTGGGCAGGGG < 1:1811067/71‑1 CATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC < 1:387251/46‑1 tatTTTAATATCAGTATACCGGACATAACCCATGAAGAAAAATGGCTCTTTTTTGAAGTGGGCA < 1:1614169/61‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:1378354/71‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:4005630/56‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:1575511/40‑1 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA > 1:3584466/1‑40 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:30812/53‑1 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:2278647/53‑1 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAT > 1:365771/1‑71 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTAGAAGTGGGCAGGGGGCAAGTAT > 1:2539488/1‑71 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC < 1:1878254/71‑1 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:2458887/70‑1 TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCC < 1:1638749/71‑1 ATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCC > 1:2423063/1‑71 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:4078532/1‑55 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:2568411/45‑1 CAGTAAACCGGACATAACCCATGAAGAAAAATCGCG > 1:2845341/1‑36 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC > 1:3549848/1‑71 GTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG < 1:3972745/49‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:3353744/63‑1 AAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT > 1:797574/1‑70 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:1051658/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:2475764/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:3908846/1‑54 ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:1299845/71‑1 ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:2411684/71‑1 ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:266360/71‑1 ACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:3573945/39‑1 CCGGACATAACCCATGAAGAAAAATCGCTCTTTTT > 1:538910/1‑35 CCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:3493852/37‑1 CCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:2697072/37‑1 GACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:3112521/35‑1 CATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG > 1:1441667/1‑35 ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:2194328/71‑1 ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:2924810/71‑1 ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:1690779/71‑1 ATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:2928691/71‑1 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:3404429/63‑1 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:154013/1‑71 ACCCATGAAGAAAAATCGCGCTTTTTTCAAGTGGGCAGGGGGCAAGTATCCCCTGCTTG > 1:2889693/1‑59 ||||||||||||||||||||||||||| ATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236730‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124504‑4124573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |