New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 315707	NA (NA)	51 (1.220)	19/100	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme

CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315639‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979                                                                                                                                            CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:2583046/70‑1    AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC                                                                     >  1:3873737/1‑68    AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC                                                                     >  1:155563/1‑68     GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC                                                                     <  1:672590/67‑1           AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGT                                                           >  1:1262809/1‑71           AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGT                                                           >  1:1330778/1‑71           AACAATTTGAAAACAAGAACATCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCA                                                              >  1:2925938/1‑68            ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTG                                                          >  1:2658028/1‑71              AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGT                                                        <  1:1840678/71‑1              AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGG                                                         >  1:3631494/1‑70              AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAACTGG                                                         >  1:13277/1‑70              AATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:2136524/1‑57                TTTGATAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:3439037/55‑1                TTTGAAAACAAGAACCTCGCTTAGTCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:576192/55‑1                TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:3485341/55‑1                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:1698089/70‑1                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:2782039/1‑57                  TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:2152109/1‑57                  TGAAAACAAGAACCTCCCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGG                                                                  >  1:2258874/1‑57                        CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:3989805/47‑1                        CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:1396624/47‑1                          AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:268536/62‑1                           GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGG                                           <  1:1386574/71‑1                                 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGga                                         >  1:684827/1‑65                                   CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTC                                   <  1:2718008/71‑1                                        GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:297800/71‑1                                        GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:1632642/71‑1                                          CTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCA                                                              <  1:3943860/37‑1                                          CTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCA                                                              <  1:3849389/37‑1                                          CTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCA                                                              <  1:2952563/37‑1                                           TGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:4081301/45‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC                         >  1:3534842/1‑71                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG                                                    <  1:4008590/44‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG                                                    <  1:195040/44‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG                                                    <  1:1323425/44‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACG                                                    <  1:859547/44‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:189377/43‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:1041060/43‑1                                             TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:2962187/43‑1                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:485529/1‑71                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:4005516/1‑71                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGG                                                <  1:1782370/46‑1                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:2579557/1‑43                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:3900875/1‑43                                               TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:2220510/1‑43                                                 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATA                     >  1:294512/1‑71                                                 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATA                     >  1:959445/1‑71                                                 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGA                                          >  1:1046829/1‑50                                                 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGA                                          >  1:1066355/1‑50                                                 CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTC                                              >  1:2077740/1‑46                                                     TTACGTGTGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            <  1:925316/60‑1                                                     TTACGTGGGTAGGATCGACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            <  1:3677813/60‑1                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:1497711/1‑69                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:1143600/1‑69                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:696511/1‑69                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            <  1:1783304/60‑1                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            <  1:3556934/60‑1                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            <  1:916036/60‑1                                                     TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTAAGCTACATACCATACA                   >  1:3182432/1‑69                                                      TACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:1595153/1‑36                                                      TACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   >  1:2448081/1‑36                                                            GGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:2012492/51‑1                                                             GTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA                 <  1:511334/63‑1                                                               AGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGA               >  1:310894/1‑63                                                                 GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      <  1:3303750/70‑1                                                                  ATCAACTGGCCCAAGTGTTAACGATGGTCTGGAAG                                        >  1:3999725/1‑35                                                                  ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    <  1:274322/71‑1                                                                  ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    <  1:92429/71‑1                                                                  ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGAT              <  1:3091310/61‑1                                                                   TCAACTGTCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:3248690/1‑46                                                                   TCAACTGTCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:3605287/1‑46                                                                   TCAACTGTCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:3533425/1‑46                                                                   TCAACTGTCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAC                             >  1:3015768/1‑45                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGag    >  1:2802694/1‑68                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:4081162/1‑70                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:2064173/1‑70                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:3738338/1‑70                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      >  1:1500292/1‑68                                                                   TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      >  1:965386/1‑68                                                                    CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  1:2191444/1‑71                                                                                                                                            CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315639‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.