| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 51 (1.220) | 230 (5.970) | 50/92 | NT | 85.5% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 31 (0.800) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
Only 100 of 347 total aligned reads displayed.
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA < 1:3130917/71‑1GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA < 1:1104225/71‑1GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA < 1:3589721/71‑1GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3468528/70‑1 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA < 1:1140767/71‑1 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATACAGTGCAGTGTCTTAGCTGAA > 1:3495845/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT < 1:1063844/71‑1 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT > 1:1504078/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATT > 1:3302135/1‑68 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT < 1:2135638/71‑1 CTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT < 1:433820/70‑1 TGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1255069/60‑1 TGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3159414/60‑1 TAGAGTTCATCATCAACTTGAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATT > 1:2904671/1‑65 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCG > 1:2497888/1‑71 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGC < 1:3026996/70‑1 TCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGT > 1:1330125/1‑70 TCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGT > 1:1313741/1‑70 TCATCATCAACTTCAATCGTTTACATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA < 1:1654921/57‑1 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:590342/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:3035336/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:3683965/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:2309035/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:3929602/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG > 1:3004622/1‑67 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT > 1:1732813/1‑60 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTT > 1:4074630/1‑59 CATAATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTG > 1:2630747/1‑70 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3556196/50‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:1608753/69‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTT > 1:952598/1‑58 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1482333/49‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:2065188/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:2221970/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:1357758/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:649737/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC < 1:1202031/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:1587809/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAA > 1:1179259/1‑69 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:2047846/67‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:1490576/67‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG > 1:1562533/1‑63 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGG > 1:1617695/1‑63 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA > 1:2689904/1‑49 CAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAAC > 1:186987/1‑68 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACT > 1:1553756/1‑71 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACT > 1:2381950/1‑71 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACT > 1:2411245/1‑71 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGAC < 1:1972465/70‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCG < 1:2641899/57‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCG < 1:257/57‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:2426699/42‑1 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGT‑AAACGACTCCTGG > 1:469906/1‑71 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGG > 1:754149/1‑71 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAA > 1:1224318/1‑61 ATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTT < 1:2962366/71‑1 TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTT > 1:2552015/1‑71 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:1781717/70‑1 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC > 1:2788294/1‑70 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA < 1:1003196/70‑1 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAG < 1:393763/70‑1 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:2291437/67‑1 AATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:3382578/67‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC < 1:370229/70‑1 ATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC < 1:3450392/70‑1 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:142826/41‑1 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:3979113/41‑1 TCCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:3367624/41‑1 CCAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > 1:2809063/1‑71 CAGTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTT > 1:310784/1‑71 GTGCAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGA < 1:552656/37‑1 CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCC < 1:4041586/71‑1 CAGTGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC < 1:3330554/70‑1 TGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACC > 1:728726/1‑71 TGTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTT < 1:498417/45‑1 GTCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > 1:3139128/1‑60 TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2976877/1‑71 TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2242441/1‑71 TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:1047263/1‑71 TCTTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTC > 1:3439644/1‑62 TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT > 1:3756435/1‑71 TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT < 1:2758265/68‑1 TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:2001093/1‑53 TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAA > 1:1165900/1‑49 TTAGCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:724272/1‑47 GCTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC < 1:3866583/71‑1 CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:3959501/71‑1 CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:3731675/71‑1 CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG > 1:1903833/1‑71 CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:3241858/71‑1 CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:1448894/71‑1 CTGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTC < 1:3289595/56‑1 TGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:3824648/70‑1 GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG > 1:671685/1‑71 GAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:913925/69‑1 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:2481067/71‑1 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:815700/71‑1 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG < 1:232081/70‑1 AATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGT < 1:259264/69‑1 ATTATTTTTTCGCTGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:3078272/67‑1 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |