Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 1,301,041 Δ1,336 bp 100% insCinsD insC, insD

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 1301041–1302369 1302376 8–1336 65 [0] [0] 65 insC–insD insC,insD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 13010400 (0.000)33 (0.920) 21/86 NT 100% intergenic (+218/‑90) ychE/insC predicted inner membrane protein/IS2 element protein
?W3110S.gb 1302377 = 0 (0.000)intergenic (+19/‑519) insD/oppA IS2 element protein/oligopeptide transporter subunit

GCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1300966‑1301040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  W3110S.gb/1302377‑1302446
                                                                                                                                                 
GCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA                                                                             >  1:2699105/1‑70
GCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA                                                                             >  1:1586854/1‑70
 CTTCTCCTCACAATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA                                                                             <  1:1786199/69‑1
   TCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATAT                                                                          >  1:2826341/1‑70
   TCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATAT                                                                          >  1:3181196/1‑70
       CTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:1786480/70‑1
       CTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      >  1:3762284/1‑70
       CTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:1512855/70‑1
             ATCATGTTATTTTCGGCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                               >  1:1574741/1‑71
              TCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATT                                                                         <  1:2239505/60‑1
               CATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACT                                                             >  1:3684476/1‑71
               CATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACT                                                             >  1:1037176/1‑71
                ATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACT                                                             <  1:96492/70‑1
                ATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA                                                                    >  1:2886059/1‑63
                  GTTATTTTCGCCACATCATAATCCTGGGCTTTCTGAAGAATAATTGAAATGA                                                                             <  1:73877/52‑1
                  GTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCC                                                          >  1:17829/1‑71
                  GTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:124873/59‑1
                  GTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:2538452/59‑1
                  GTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA                                                                             <  1:1483819/52‑1
                    TATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTT                                                        >  1:3509567/1‑71
                    TATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTT                                                        >  1:2300254/1‑71
                     ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       >  1:3839996/1‑71
                     ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       >  1:465566/1‑71
                     ATTTTCGCCACATCATATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTG                                                      >  1:2263993/1‑71
                      TTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       <  1:3883074/70‑1
                      TTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       <  1:187893/70‑1
                              ACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGA                                              <  1:210679/71‑1
                              ACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGA                                              <  1:460926/71‑1
                              ACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGA                                              <  1:1441449/71‑1
                              ACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGA                                              <  1:2532787/71‑1
                               CATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       <  1:2979646/61‑1
                                ATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA                                                                        >  1:986717/1‑43
                                  CATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGT                                          >  1:344730/1‑71
                                  CATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCC                                                                <  1:72932/49‑1
                                   ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG                                         >  1:4060010/1‑71
                                   ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG                                         >  1:1685160/1‑71
                                   ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAAT                                                                   >  1:3555715/1‑45
                                   ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAAT                                                                   >  1:3469321/1‑45
                                    TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:845433/41‑1
                                    TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:440039/41‑1
                                    TAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:1653735/41‑1
                                     atTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:816070/38‑1
                                         CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAAT                                   <  1:3148664/71‑1
                                         CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA                                    <  1:803001/70‑1
                                         CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGG                                                     >  1:292173/1‑53
                                         CTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:1507216/36‑1
                                         CTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:3757474/36‑1
                                           GGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAA                                 >  1:1961352/1‑71
                                            GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA                                  <  1:3706070/69‑1
                                             GCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATA                               <  1:2182572/71‑1
                                               TTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA                                                   >  1:1595700/1‑49
                                               TTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTA                                                   >  1:1725547/1‑49
                                                 GCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       >  1:1709214/1‑43
                                                     AAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAAT                         <  1:1242555/69‑1
                                                            ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATT                <  1:830521/71‑1
                                                            ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATT                <  1:2396610/71‑1
                                                               GAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATT             >  1:1261173/1‑71
                                                               GAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATT             >  1:2594471/1‑71
                                                               GAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATT             >  1:2329294/1‑71
                                                               GAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATT             >  1:2332660/1‑71
                                                                 AATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAG                                           <  1:1963596/39‑1
                                                                  ATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTG          >  1:3626107/1‑71
                                                                  ATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTG          <  1:925216/71‑1
                                                                  ATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTG          <  1:580221/71‑1
                                                                        TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT     <  1:963613/70‑1
                                                                        TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATC                            <  1:602033/47‑1
                                                                          ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  1:27666/1‑71
                                                                          ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  1:2783962/1‑71
                                                                          ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  1:436404/1‑71
                                                                          ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  1:4022926/1‑71
                                                                          ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCAT       >  1:969976/1‑66
                                                                          ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTTTAAATTATTGTGCATTTCAC  <  1:2357583/70‑1
                                                                          ATTAATTCCACTGACTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCAT       >  1:1372869/1‑66
                                                                                                                                                 
GCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1300966‑1301040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  W3110S.gb/1302377‑1302446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.