| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2320795–2322124 | 2322130 | 7–1336 | 61 [0] | [0] 54 | insD–[rcsC] | insD,insC,[rcsC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2320794 | 0 (0.000) | 39 (1.060) | 17/88 | NT | 100% | intergenic (‑59/+11) | rcsC/insD | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN/IS2 element protein |
| ? | W3110S.gb | 2322131 = | 0 (0.000) | coding (2368/2424 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
TCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2320719‑2320794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG > W3110S.gb/2322131‑2322200 TCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:2006292/71‑1 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:1202489/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:1779128/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:364640/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:1593134/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:443915/1‑71 CACGACCAGAATCAGCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:3916103/1‑71 CCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:1890260/64‑1 CCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:1263774/64‑1 CCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:2003051/64‑1 ATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTC < 1:3208611/71‑1 ATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTC < 1:1981198/71‑1 ATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTC < 1:1769103/71‑1 ATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTC < 1:549141/71‑1 ATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTC < 1:289997/71‑1 TCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCC < 1:913753/71‑1 TCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:1656663/58‑1 TCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC < 1:3623848/71‑1 TCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATC < 1:3683528/58‑1 CATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCT > 1:2962885/1‑71 CATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCT > 1:1191760/1‑71 CATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCT > 1:1196609/1‑71 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTC < 1:2992469/71‑1 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:1647726/1‑58 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:2207445/1‑58 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:2493986/1‑58 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:1508120/1‑58 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:3147894/1‑58 TATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:3849184/52‑1 TATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:2352454/52‑1 ATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGA > 1:3177840/1‑71 ATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGA > 1:1690809/1‑71 ATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGA > 1:2031416/1‑71 ATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGA > 1:634250/1‑71 TCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTC < 1:1745558/68‑1 TCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTC < 1:3308277/68‑1 CGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:405850/49‑1 GTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCA < 1:1094774/71‑1 TTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:310053/71‑1 ATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:955130/1‑47 ATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT > 1:3190735/1‑47 ATCGCTGACCGCATTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:344461/1‑57 TCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:1865770/70‑1 GACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:996486/36‑1 CCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCC < 1:2996334/71‑1 CGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCC < 1:1447124/70‑1 GTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGG < 1:3648187/71‑1 GTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGG < 1:2766790/71‑1 CGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCT < 1:863258/71‑1 CAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCAT < 1:3499084/71‑1 GAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:2134529/42‑1 GAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:922247/42‑1 GAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:2686516/42‑1 GAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCA < 1:2843837/36‑1 GAGCGTAAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:3867518/42‑1 AGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:3239710/39‑1 AGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:4081814/39‑1 AGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:3593854/39‑1 TTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAG > 1:539476/1‑70 TTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:1318852/35‑1 TTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:718631/35‑1 TAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCA > 1:993975/1‑62 AGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA > 1:3468773/1‑35 AGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA > 1:344964/1‑35 GGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAG < 1:1290366/67‑1 GGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAG < 1:1847625/67‑1 GGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTACCTCATGCGGAGCAG < 1:1294192/67‑1 GATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCT < 1:3466408/54‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTGGCTCATGCGGAGCAGCCACACT > 1:3514309/1‑71 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACT > 1:3857679/1‑71 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACT < 1:779736/71‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACA > 1:3157090/1‑69 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCA > 1:2212484/1‑54 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTA > 1:159338/1‑49 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGT < 1:1256741/48‑1 TCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG < 1:2810177/71‑1 TCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG < 1:3484966/71‑1 TCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2320719‑2320794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG > W3110S.gb/2322131‑2322200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |