| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 41 (0.980) | 119 (3.970) +AGGGTCCCTAAGTC |
39/72 | NT | 87.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 6 (0.140) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 262 total aligned reads displayed.
GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 | gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:939456/71‑1 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:3251335‑M1/71‑2 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:2455839‑M1/71‑2 (MQ=255) ggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa < 1:3402210‑M1/71‑2 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:1618548/71‑1 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt < 1:1583398‑M1/71‑6 (MQ=255) aGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggt > 1:341046‑M1/1‑66 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:2901990‑M1/71‑10 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:3935340/71‑1 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:1100041‑M1/68‑18 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:1491241‑M1/68‑18 (MQ=255) tccgtGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtcta > 1:1448149‑M1/3‑53 (MQ=255) tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACa < 1:1550843/70‑1 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:2642945‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaa > 1:3991269‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:3556834‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTATCATAAagg > 1:813544‑M1/2‑52 (MQ=255) gTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:2326923‑M1/71‑22 (MQ=255) tGCCGGTTGTGTAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1287835‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:2631118‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:2812906‑M1/71‑23 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:3856859‑M1/1‑47 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:2155922‑M1/1‑47 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:2416209‑M1/1‑47 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:136545‑M1/1‑47 (MQ=255) cGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag < 1:3751829‑M1/71‑26 (MQ=255) gTTGTGAATAATAAGTGAATGATGTAGCCGTCAAGTTGTCATaa < 1:2954538/44‑1 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggc > 1:1406798‑M1/1‑44 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag < 1:2544281‑M1/46‑3 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:2440612‑M1/1‑42 (MQ=255) tgtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:298724‑M1/1‑42 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:3816774‑M1/1‑41 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:1187166‑M1/1‑41 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt > 1:1820969/1‑70 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:2480813/70‑1 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt > 1:234100/1‑70 (MQ=255) tgAAGAAAAAGTGAATGATTTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccag < 1:3013324‑M1/71‑32 (MQ=255) tgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:2857236‑M1/62‑23 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa > 1:360923‑M1/1‑38 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:2577086‑M1/1‑38 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:1016728‑M1/71‑35 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:2177415‑M1/71‑35 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg > 1:3434746‑M1/1‑37 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:504029‑M1/71‑36 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:1268572/36‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:1051393‑M1/46‑12 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:1908900‑M1/46‑12 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaa < 1:2828695‑M1/46‑12 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAag > 1:634290‑M1/1‑35 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:75862‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3711265‑M1/71‑38 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc > 1:148150‑M1/1‑33 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:3352273‑M1/1‑31 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:321490‑M1/1‑31 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg < 1:1555141/62‑1 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg < 1:1247349/62‑1 (MQ=255) tGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg < 1:1867289/62‑1 (MQ=255) gAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg < 1:2719494/61‑1 (MQ=255) tgatgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcc < 1:2689803‑M1/71‑47 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccaggctttcgactgagcctt < 1:3058557‑M1/71‑49 (MQ=255) tgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:412621‑M1/39‑18 (MQ=255) gTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttc > 1:1543235‑M1/1‑21 (MQ=255) gCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgt < 1:1447511‑M1/70‑53 (MQ=255) gCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:3173192‑M1/1‑18 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:1681435/71‑1 (MQ=255) gCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAg < 1:1776510/71‑1 (MQ=255) cttCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTg < 1:1715579/44‑1 (MQ=255) gTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtttta < 1:3894014‑M1/71‑57 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcct < 1:848915‑M1/61‑48 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1980870‑M1/36‑23 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1516451‑M1/36‑23 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatt > 1:1318990‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggccca > 1:2788763‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:4033409‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaa > 1:2834339‑M1/1‑12 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa > 1:3327626/1‑47 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa > 1:1663223/1‑47 (MQ=255) aaGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATccc > 1:2147905/1‑71 (MQ=255) gTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactg < 1:4077734‑M1/52‑43 (MQ=255) gTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcg < 1:547716‑M1/48‑39 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttt < 1:452365‑M1/63‑55 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:1226067‑M1/46‑38 (MQ=255) ttGTCATAAagggtccctaagtctaaaacgaaaggcccagtct < 1:721855‑M1/43‑35 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagc > 1:2267498‑M1/1‑8 (MQ=255) tGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCt > 1:23010/1‑68 (MQ=255) tGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCt > 1:3071193/1‑68 (MQ=255) tGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCt > 1:3447353/1‑68 (MQ=255) gTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg > 1:1926512‑M1/1‑7 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:221242‑M1/70‑65 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgtttta < 1:667326‑M1/62‑57 (MQ=255) tCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGAtt < 1:1156931/70‑1 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgaccg < 1:3167142‑M1/68‑65 (MQ=255) aTAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttt < 1:2612170‑M1/58‑55 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa > 1:462536/1‑39 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCAt < 1:2073388/46‑1 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCAt < 1:1857212/46‑1 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa > 1:726431/1‑59 (MQ=255) tAAagggtccctaagtctaaaacgaaaggcccagtctttcga > 1:1008102‑M1/1‑3 (MQ=255) aaagggtccctaagtctaaaacgaaaggcccagtctttcgactg > 1:2585238‑M1/1‑2 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa < 1:34807/71‑1 (MQ=255) | GGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71195‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |