| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 13 (0.310) | 15 (0.530) | 10/68 | NT | 71.8% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 3 (0.110) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 102 total aligned reads displayed.
TTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTA > W3110S.gb/1209300‑1209435 | tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg > 1:656900‑M1/68‑71 (MQ=255)tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg > 1:261968‑M1/68‑71 (MQ=255) gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg > 1:3701005‑M1/67‑70 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:707458‑M1/6‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:3312426‑M1/6‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:1932723‑M1/6‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:2914956‑M1/6‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:741442‑M1/6‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:748072‑M1/66‑70 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:2505933‑M1/7‑1 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt > 1:3318279‑M1/64‑70 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:1154283‑M1/63‑71 (MQ=255) atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg > 1:1444943‑M1/62‑71 (MQ=255) atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg > 1:3659503‑M1/62‑71 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:3161579‑M1/9‑1 (MQ=255) cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:944586‑M1/71‑1 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:1224835‑M1/59‑70 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag < 1:1785660‑M1/12‑1 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 1:3094406‑M1/59‑70 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa > 1:1159022‑M1/58‑71 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGGACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:3325686‑M1/71‑1 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 1:1565477‑M1/71‑1 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG > 1:371539‑M1/1‑71 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG > 1:1464674‑M1/1‑71 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:1533387‑M1/18‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:1501986‑M1/18‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:562433‑M1/18‑1 (MQ=255) taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgt > 1:1053003‑M1/52‑52 (MQ=255) taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:3625601‑M1/52‑59 (MQ=255) taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 1:4047947‑M1/52‑59 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct > 1:1454582‑M1/1‑67 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA > 1:3792855‑M1/1‑65 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA > 1:2889890‑M1/1‑64 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT > 1:3956413‑M1/1‑57 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:4011304‑M1/24‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt > 1:3260993‑M1/47‑48 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt < 1:499193‑M1/70‑10 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat > 1:2362105‑M1/1‑61 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat > 1:1333044‑M1/1‑61 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1151498‑M1/46‑71 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:871510/71‑1 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:2703242‑M1/43‑68 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:2790837‑M1/43‑68 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:798008‑M1/29‑1 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG < 1:1472024‑M1/55‑1 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 1:3913420‑M1/30‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:142894‑M1/1‑55 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:2399459‑M1/1‑55 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc > 1:3580451‑M1/1‑55 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGAGCAAAACTCAATg < 1:3017876/69‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:2626828‑M1/33‑1 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta > 1:625402‑M1/1‑53 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa > 1:3532217/1‑60 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:1819129/1‑70 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:516861/1‑70 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 1:250515/1‑70 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:721542‑M1/60‑9 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTggg > 1:3929187‑M1/35‑44 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTg < 1:1753951‑M1/8‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:3201604‑M1/42‑1 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCTACGGCTa > 1:176164‑M1/29‑70 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:3425490‑M1/29‑70 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa > 1:2396744‑M1/28‑69 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:2402004‑M1/1‑38 (MQ=255) gtgCAAACGGCTCTCGAAAACCATGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:3537188‑M1/1‑38 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt > 1:2457377‑M1/1‑37 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa > 1:1836306/1‑38 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa > 1:1774296/1‑38 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc > 1:2071166‑M1/1‑36 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc > 1:648600‑M1/1‑36 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc > 1:895001‑M1/1‑36 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:2490623‑M1/49‑17 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:2335683‑M1/49‑17 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:1832915‑M1/49‑17 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:2680080‑M1/49‑17 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 1:2419524‑M1/49‑17 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:665855‑M1/16‑58 (MQ=255) cGGGTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:766747‑M1/1‑31 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg > 1:3002669‑M1/1‑30 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:1161830‑M1/1‑30 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg > 1:3670743‑M1/1‑30 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc < 1:2539250‑M1/71‑43 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:1256086/55‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:3883302/55‑1 (MQ=255) gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:1453983/55‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:2445261‑M1/47‑1 (MQ=255) tcatatacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:2782592‑M1/10‑70 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:2302380‑M1/10‑70 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:2253498/49‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:1782538/1‑70 (MQ=255) aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt < 1:2571666‑M1/60‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:501946/71‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc > 1:1610940/1‑71 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:4011126/71‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:3486720/71‑1 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta < 1:1478801‑M1/69‑1 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta < 1:1808715‑M1/69‑1 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 1:3032691‑M1/50‑34 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 1:1666841‑M1/50‑34 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 1:4065852‑M1/56‑41 (MQ=255) | TTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTA > W3110S.gb/1209300‑1209435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |