| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 57 (1.360) | 251 (7.720) +CGCGTACAACT |
51/78 | NT | 84.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 65 (1.550) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 474 total aligned reads displayed.
TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 | tCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc < 1:2552857/71‑1 (MQ=255) ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:2213535/1‑69 (MQ=255) ctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCaa < 1:1199266‑M2/3‑1 (MQ=255) tacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg > 1:1331078‑M2/68‑71 (MQ=255) acctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGt > 1:3200401‑M2/67‑71 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:3126505‑M2/66‑71 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTc > 1:2876306‑M2/66‑71 (MQ=255) aaaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt > 1:16745/1‑71 (MQ=255) acgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:914596‑M2/1‑1 (MQ=255) acgctttttatcgcaactctctactgtttctccataccagtttttttggacgcgtacaactCAAGTCTGa < 1:1843218‑M2/9‑1 (MQ=255) cgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:637579‑M2/61‑71 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:2837368/70‑1 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:1935864‑M2/56‑70 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:724334‑M2/16‑1 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:1388916‑M2/17‑1 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:2521039‑M2/17‑1 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAATCTGACATAAATg < 1:1792806‑M2/17‑1 (MQ=255) atcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:3401165‑M2/17‑1 (MQ=255) gTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTc > 1:1524377/1‑57 (MQ=255) gTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTc > 1:2858690/1‑57 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:3309314‑M2/22‑1 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:378132‑M2/22‑1 (MQ=255) actctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2088038‑M2/1‑1 (MQ=255) actctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:3376141‑M2/17‑1 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATg < 1:611016‑M2/26‑1 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATg < 1:1970609‑M2/26‑1 (MQ=255) ctctctactgtttctccatacccgtttctttggacgcgtacaactCAAGTCTGACATAAATGACCGc < 1:1982677‑M2/22‑1 (MQ=255) tctctactgtttctccatacccctttttttggacgcgtacaactCAAGTCTGACATAAATg < 1:2698111‑M2/17‑1 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:3654764‑M2/44‑52 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg > 1:929257‑M2/44‑71 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg > 1:1629674‑M2/44‑71 (MQ=255) ctctactgtttctccatacccgttattttggacgcgtacaactCAAGTCTGACATAAATg > 1:3583904‑M2/44‑60 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2335652‑M2/1‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg < 1:46545/68‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:2898861/1‑71 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:3802240/1‑71 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:2458715‑M2/13‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt < 1:2761485‑M2/25‑1 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg < 1:2034074‑M2/28‑1 (MQ=255) actgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATATATGACCGCTATGAg < 1:3727017‑M2/28‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCa > 1:791056‑M2/39‑40 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:3061127‑M2/39‑68 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:2480632‑M2/37‑54 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc > 1:2387816‑M2/37‑70 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa < 1:3530447‑M2/15‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:2425270‑M2/34‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:840551‑M2/36‑71 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCa > 1:3339285‑M2/36‑70 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1553371‑M2/34‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:2928579/1‑66 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:1653083/69‑1 (MQ=255) ttCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:4070691/69‑1 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:3984168‑M2/31‑66 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTa > 1:1162132/1‑52 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:3012398/1‑69 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:3601826‑M2/13‑1 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:1423452‑M2/26‑55 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1913623‑M2/26‑69 (MQ=255) cgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:2291121‑M2/47‑1 (MQ=255) gtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:676518‑M2/49‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGc < 1:1463751‑M2/29‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGc < 1:2314074‑M2/29‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCa < 1:1872575‑M2/46‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGAc > 1:1309230‑M2/20‑38 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGa > 1:1492594‑M2/20‑46 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:1724422‑M2/20‑56 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:3697570‑M2/20‑56 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGa > 1:2371360‑M2/20‑67 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:734513‑M2/51‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:126417‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:886655‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:2177996‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:3625857‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:314867‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:3904716/1‑58 (MQ=255) tttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:5003‑M2/53‑1 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc > 1:3079714‑M2/14‑70 (MQ=255) gacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:2235177‑M2/58‑2 (MQ=255) acgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCtcgct < 1:3465732‑M2/59‑3 (MQ=255) tGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:3469095/66‑1 (MQ=255) cgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:15847‑M2/37‑1 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc > 1:3264365/1‑70 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:2606241‑M2/34‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:4000399‑M2/34‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCtcgct < 1:1342313‑M2/59‑3 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCtcgct < 1:2634881‑M2/59‑3 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc < 1:2975163‑M2/58‑2 (MQ=255) aaaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCg > 1:21507/1‑70 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:2011980‑M2/7‑69 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa < 1:2798082/70‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCa > 1:3835454‑M2/6‑35 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCGATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:969634‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca < 1:2729600‑M2/65‑3 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:568087‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTACTCGCTACCGcaa > 1:1006154‑M2/6‑71 (MQ=255) caactCAAGTCTGACACAAATGACCGCTATGAGCAc > 1:1098559‑M2/6‑36 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAac > 1:3951204‑M2/4‑70 (MQ=255) actCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAac > 1:2668172‑M2/4‑70 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1700729‑M2/34‑1 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1060865‑M2/34‑1 (MQ=255) | TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |