| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 15 (0.360) | 22 (0.780) | 11/68 | NT | 77.1% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 3 (0.110) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
TGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > W3110S.gb/1211125‑1211246 | tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt > 1:1380760‑M2/1‑55 (MQ=255)tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt > 1:1519818‑M2/1‑55 (MQ=255) ttGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:3818356‑M2/59‑7 (MQ=255) ttGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 1:3823068‑M2/59‑7 (MQ=255) gCTGCAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt > 1:533078/1‑71 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc < 1:2539250‑M2/71‑30 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 1:1757429‑M2/49‑8 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 1:554236‑M2/49‑8 (MQ=255) gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 1:81251‑M2/49‑8 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa < 1:4065852‑M2/56‑17 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:895001‑M2/1‑35 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:2071166‑M2/1‑35 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 1:648600‑M2/1‑35 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccatggttttcgagagccgtttgcac > 1:3537188‑M2/1‑33 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac > 1:2402004‑M2/1‑33 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag < 1:1666841‑M2/50‑18 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag < 1:3032691‑M2/50‑18 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca > 1:2457377‑M2/1‑32 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt > 1:358430/1‑67 (MQ=255) ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCa < 1:3409275/71‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc > 1:3002669‑M2/1‑25 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc > 1:3670743‑M2/1‑18 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc > 1:1161830‑M2/1‑18 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagacccg > 1:766747‑M2/1‑18 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:2680080‑M2/49‑34 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:2490623‑M2/49‑34 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:2419524‑M2/49‑34 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:2335683‑M2/49‑34 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:1832915‑M2/49‑34 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt > 1:625402‑M2/1‑10 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:949564‑M2/70‑62 (MQ=255) aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 1:499193‑M2/70‑62 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc > 1:2362105‑M2/1‑8 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc > 1:1333044‑M2/1‑8 (MQ=255) aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt < 1:721542‑M2/60‑53 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg > 1:1454582‑M2/1‑4 (MQ=255) gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga > 1:3580451‑M2/1‑3 (MQ=255) gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga > 1:2399459‑M2/1‑3 (MQ=255) gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga > 1:142894‑M2/1‑3 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:1525675/1‑48 (MQ=255) | TGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > W3110S.gb/1211125‑1211246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |