| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 47 (1.140) | 21/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 146 total aligned reads displayed.
GAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920210‑3920348 | gAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAATTGTACGAac > 1:1104405/1‑70 (MQ=255)gAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:3912561/1‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:4046403‑M2/67‑71 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:2273479‑M2/1‑70 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt > 1:330173‑M2/1‑70 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:376308‑M2/66‑71 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:3843846‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:747182‑M2/9‑1 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac < 1:812575‑M2/71‑10 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:3230500‑M2/66‑6 (MQ=255) aatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGc > 1:2487723‑M2/56‑70 (MQ=255) tttgagaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt < 1:941616‑M2/6‑1 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:2602041‑M2/1‑57 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:2574820‑M2/70‑15 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagca < 1:1815374‑M2/68‑16 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:2600621‑M2/50‑70 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:409983‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:3496254‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1556424‑M2/1‑52 (MQ=255) cGACCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:1743587‑M2/56‑5 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:2855690‑M2/4‑1 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:3650326‑M2/1‑50 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3323250‑M2/9‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1237684‑M2/9‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1655648‑M2/9‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:3318993‑M2/7‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:2957878‑M2/7‑1 (MQ=255) caagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:1896076‑M2/7‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:2714753‑M2/71‑24 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga > 1:128830‑M2/1‑48 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:2762427‑M2/44‑71 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:2403096‑M2/28‑1 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:1924364‑M2/71‑26 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1329579‑M2/56‑11 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:364922‑M2/56‑11 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:2485030‑M2/1‑45 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcac < 1:3069410‑M2/2‑1 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc > 1:3006454‑M2/42‑48 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc > 1:31021‑M2/42‑48 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATc > 1:3376464‑M2/42‑48 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:3726670/1‑43 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:3991433/1‑43 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2320844‑M2/71‑28 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacg < 1:2406085‑M2/71‑28 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:402599‑M2/71‑31 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcgg < 1:2815112‑M2/71‑31 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:3885067‑M2/38‑40 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:1334368‑M2/38‑40 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc < 1:2217098‑M2/71‑32 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac < 1:1780425/36‑1 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2903587‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:1996587‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:1292135‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:2661873‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATACCAGAGAAGTGTACGAac < 1:1813831/36‑1 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:463422‑M2/7‑1 (MQ=255) ttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:3211073‑M2/7‑1 (MQ=255) cATCGTTCTGGTTAGCAGAGAAGTGTACGAACACtgatcttacacag < 1:22923‑M2/47‑14 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtg > 1:2872910‑M2/1‑34 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:4070504‑M2/70‑37 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:1585925‑M2/41‑9 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:618542‑M2/41‑9 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:2609664‑M2/41‑9 (MQ=255) cGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:3286139‑M2/70‑40 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagt < 1:972555‑M2/70‑41 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:31676‑M2/49‑20 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1862892‑M2/46‑17 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:675031‑M2/38‑9 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatctta < 1:3585245‑M2/38‑9 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:2508312‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:3257380‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatctt > 1:3474212‑M2/1‑29 (MQ=255) tgtccatattacgtgggtatgatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:2246771‑M2/43‑1 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:814333‑M2/71‑45 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTc < 1:1945078‑M2/22‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTTATGAAGCCGAAGCCGTTGTCa > 1:2861912‑M2/21‑70 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa < 1:2610503‑M2/50‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa < 1:1652595‑M2/50‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa < 1:428813‑M2/50‑1 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa > 1:1986525‑M2/21‑70 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:2545397‑M2/21‑71 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:2141155‑M2/21‑1 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:3607421‑M2/18‑65 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:1114461‑M2/71‑51 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1470287‑M2/17‑71 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:2096997‑M2/32‑1 (MQ=255) tacctgggtaggatcACACATCTTTAGAGCCATCGt > 1:923746‑M2/16‑36 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca < 1:3799055‑M2/68‑50 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg > 1:2701286‑M2/15‑70 (MQ=255) gtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc < 1:2085984‑M2/59‑1 (MQ=255) tgtgtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAAc > 1:748406‑M2/12‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga < 1:3491291‑M2/64‑56 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGTCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:3767194‑M2/67‑1 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:3353992‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1190588‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:2664984‑M2/50‑44 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:2191426‑M2/50‑44 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:992025‑M2/1‑7 (MQ=255) acacttatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca > 1:3493167‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:1235048‑M2/71‑68 (MQ=255) | GAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920210‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |