| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 36 (0.860) | 19/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAA > W3110S.gb/3932864‑3933002 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:1891144‑M2/1‑70 (MQ=255)cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:734112‑M2/1‑70 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:2035858‑M2/8‑1 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:3457407‑M2/71‑6 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:1915460‑M2/70‑5 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg < 1:2758661‑M2/67‑3 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcct > 1:1679690‑M2/1‑64 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:2333111‑M2/71‑10 (MQ=255) cGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacc > 1:983801‑M2/1‑61 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:2462790‑M2/56‑70 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:239116‑M2/55‑71 (MQ=255) tCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:3285575‑M2/71‑18 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3312747‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2389598‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2482663‑M2/1‑53 (MQ=255) cagtcCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:4030506‑M2/68‑18 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:4069653‑M2/1‑50 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:1056150‑M2/26‑1 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:1511344‑M2/71‑24 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1278791‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1782537‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1777929‑M2/29‑1 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:4022580‑M2/41‑69 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacag > 1:849756‑M2/1‑42 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3002419‑M2/33‑1 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:2417282‑M2/33‑1 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:1725428‑M2/59‑20 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:2587443‑M2/8‑1 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcct < 1:1622408‑M2/70‑33 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc > 1:4021018‑M2/34‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:583874‑M2/33‑70 (MQ=255) cGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:562617‑M2/1‑36 (MQ=255) cGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1220180‑M2/1‑36 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:1885389‑M2/38‑1 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:3290972‑M2/1‑34 (MQ=255) tCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:790577‑M2/1‑34 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:863212‑M2/37‑6 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga > 1:490087‑M2/1‑30 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggccta > 1:1568465‑M2/1‑29 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1883758‑M2/26‑54 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:986948‑M2/25‑70 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2877187‑M2/1‑28 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:3858723‑M2/71‑45 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:1586173‑M2/71‑45 (MQ=255) gAATTTAAAATCGGCAACACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc < 1:1800615‑M2/70‑44 (MQ=255) aaTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt > 1:1616821‑M2/1‑26 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg > 1:1664661‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt > 1:2162812‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:953073‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1355384‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3142511‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:222080‑M2/1‑25 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:379069‑M2/1‑24 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3276265‑M2/1‑24 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:2306913‑M2/21‑71 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:3456731‑M2/21‑71 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2718291‑M2/52‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:1164268‑M2/41‑20 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2901108‑M2/52‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:65850‑M2/18‑71 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3969817‑M2/18‑71 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3421842‑M2/18‑71 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:498047‑M2/22‑1 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1452093‑M2/17‑70 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3658826‑M2/17‑70 (MQ=255) atagctgggtaagatcAGTTATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2302952‑M2/17‑70 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:2830752‑M2/16‑39 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3244540‑M2/16‑39 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:9876‑M2/56‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:645819‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:2001193‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:3218024‑M2/56‑1 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:2494622‑M2/1‑19 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1074631‑M2/1‑16 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1212010‑M2/1‑16 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:3410356‑M2/10‑51 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:2183‑M2/10‑51 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc < 1:616840‑M2/62‑1 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc < 1:901068‑M2/62‑1 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa < 1:938232‑M2/63‑1 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:3426506‑M2/40‑1 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa > 1:3036170‑M2/6‑45 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:51917‑M2/6‑71 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:3490918‑M2/6‑71 (MQ=255) accGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttacg < 1:2270978‑M2/71‑63 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTc < 1:3386157‑M2/61‑1 (MQ=255) atcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:874685‑M2/4‑57 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:3044149‑M2/2‑49 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:2429752‑M2/2‑49 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa > 1:2777938‑M2/2‑48 (MQ=255) gTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:2903637/70‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaaa < 1:3167296/71‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAA > W3110S.gb/3932864‑3933002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |