| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 6 (0.140) | 20 (0.580) | 15/82 | NT | 80.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 5 (0.150) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAA > W3110S.gb/4547598‑4547735 | aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1023380/1‑71 (MQ=255) aCAATAGAATATTTAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAt > 1:3020752‑M2/1‑70 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 1:2997816‑M2/70‑7 (MQ=255) tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaat < 1:3846763‑M2/71‑11 (MQ=255) tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaat < 1:3401124‑M2/71‑11 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:773379/1‑57 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:658312/1‑57 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1897485/1‑57 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:921584/1‑51 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:3527179/1‑51 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt < 1:2280298/71‑1 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:3303095/1‑50 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa > 1:1439707/1‑50 (MQ=255) aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattt > 1:12169‑M2/1‑49 (MQ=255) aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattt > 1:2518498‑M2/1‑49 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatt < 1:1670767‑M2/71‑26 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttg < 1:3401555‑M2/71‑28 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:294122/1‑54 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:2260031/1‑54 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgt > 1:84682‑M2/1‑43 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttt < 1:516503‑M2/70‑34 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgt > 1:3139442/1‑71 (MQ=255) gTCCGTGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaacttt > 1:3887779‑M2/1‑30 (MQ=255) gTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaacttt > 1:3554390‑M2/1‑30 (MQ=255) aTGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaa > 1:213061‑M2/1‑23 (MQ=255) tGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaa < 1:2203986‑M2/70‑49 (MQ=255) tGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattta > 1:277567‑M2/1‑22 (MQ=255) tGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattta > 1:1653009‑M2/1‑22 (MQ=255) tGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtattta > 1:1830884‑M2/1‑22 (MQ=255) gCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 1:2010712/1‑71 (MQ=255) tttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt < 1:1791998/41‑1 (MQ=255) ttCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt < 1:1447435/40‑1 (MQ=255) ctATGAGTGAAAAtggccccaattgtcttgtattta > 1:3666275‑M2/1‑13 (MQ=255) ctATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaac < 1:1339663‑M2/50‑38 (MQ=255) tGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaa > 1:3224367‑M2/1‑10 (MQ=255) tGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatca > 1:3138949‑M2/1‑10 (MQ=255) tGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatca < 1:2117665‑M2/70‑61 (MQ=255) tGAGTCAAAAtggccccaattgtcttgtatttatt > 1:2985352‑M2/1‑10 (MQ=255) tCAAAAtggccccaattgtcttgtatttatttgttttttt > 1:1215506‑M2/1‑6 (MQ=255) aaaatggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctct < 1:1960780‑M2/71‑68 (MQ=255) aatggccccaattgtcttgtatttatttgtttttttaacttt > 1:3963529‑M2/1‑2 (MQ=255) | AACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAA > W3110S.gb/4547598‑4547735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |