Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,085 T→C 84.1% S233S (AGT→AGC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,0850TC84.1% 727.9 / 109.1 282S233S (AGT→AGCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (16/29);  new base C (97/140);  total (113/169)
Fisher's exact test for biased strand distribution p-value = 6.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 286 total aligned reads displayed.

GTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGAC  >  W3110S.gb/71015‑71154
                                                                      |                                                                     
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCa                                                                     >  1:2604867/1‑66 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                 <  1:2669447/70‑1 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                 >  1:2517710/1‑70 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                 >  1:1675816/1‑70 (MQ=255)
       acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCg                                                                 >  1:445998/1‑70 (MQ=255)
        caTCTTTTCCGCCAGCAGTTAGGTATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                               <  1:1769076/71‑1 (MQ=255)
          tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                             >  1:1883919/1‑71 (MQ=255)
              ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                             <  1:2238681/67‑1 (MQ=255)
                ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                         <  1:3254640/69‑1 (MQ=255)
                ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                                       >  1:863725/1‑71 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                     <  1:2364733/71‑1 (MQ=255)
                  gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                     <  1:3632608/71‑1 (MQ=255)
                   ccAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                    <  1:2989061/71‑1 (MQ=255)
                    cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAg                                                   <  1:1040985/71‑1 (MQ=255)
                     agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGc                                                  <  1:1512576/71‑1 (MQ=255)
                     agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGc                                                  <  1:3547910/71‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgc                                                             <  1:3901598/59‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgc                                                             <  1:2293712/59‑1 (MQ=255)
                      gcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAgc                                                             <  1:1076668/59‑1 (MQ=255)
                      gcagTTAGGGATTAGCGGCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCa                                                 <  1:240472/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                                <  1:3084101/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                                <  1:2024246/71‑1 (MQ=255)
                       cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                                <  1:218793/71‑1 (MQ=255)
                         gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTCAGCACTa                                              <  1:3605659/71‑1 (MQ=255)
                          ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                     <  1:2839682/63‑1 (MQ=255)
                          ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac                                             <  1:4082804/71‑1 (MQ=255)
                          ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTAc                                             <  1:563996/71‑1 (MQ=255)
                           tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   >  1:3496995/1‑64 (MQ=255)
                           tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   >  1:2781331/1‑64 (MQ=255)
                           tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGATGCTTTTGAGCaccacc                                            >  1:3343053/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   >  1:2166238/1‑63 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                                <  1:3662041/66‑1 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                           >  1:2210596/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                           >  1:510811/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                           >  1:306174/1‑71 (MQ=255)
                            aGGGATTAGCGTCTTAAGCTGGCGCGAGGACAAACGTATCAGCCAGGCGAAgctg                                                           >  1:2481814/1‑55 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:4005159/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:480104/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:1875849/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:3932531/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:1708371/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:1177174/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:1600295/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                          <  1:961426/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                          <  1:3453757/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                          <  1:3504832/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCg                                          <  1:3871013/71‑1 (MQ=255)
                             gggATTAGCGTCTTAAGCTGGCGCGAAGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:157042/71‑1 (MQ=255)
                              ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   <  1:792933/61‑1 (MQ=255)
                              ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:3588782/70‑1 (MQ=255)
                              ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          >  1:3794115/1‑70 (MQ=255)
                                aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGc                                                  <  1:1959987/60‑1 (MQ=255)
                                  tAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCAc                                                >  1:1643708/1‑60 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                              >  1:809148/1‑45 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                              >  1:1794470/1‑45 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   >  1:1477268/1‑56 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   >  1:2532217/1‑56 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                    >  1:2735694/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                     >  1:328855/1‑70 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGGAATAGTCAGGCGAAGCTGCTTTTCAGCACTACCCGGATGcc                                    >  1:3490077/1‑71 (MQ=255)
                                   aGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGcc                                    >  1:1816831/1‑71 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                    <  1:778042/70‑1 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                    >  1:405001/1‑70 (MQ=255)
                                    gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                    <  1:2462624/70‑1 (MQ=255)
                                      gTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTAt                                 >  1:739591/1‑71 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                   <  1:2898746/52‑1 (MQ=255)
                                       tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                                <  1:3417531/71‑1 (MQ=255)
                                         ttAAGCTGGCGCTAGGACCAACGCATTAGTCAGGCGa                                                                <  1:2119623/37‑1 (MQ=255)
                                         ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                              >  1:2551799/1‑39 (MQ=37)
                                         ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                              >  1:2055431/1‑71 (MQ=255)
                                         ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTg                                                     <  1:2266042/48‑1 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACTTATCAGCCAGGCGAAGCTGCTTTTCAGCACCACCCGGATGCCTATCGcc                             <  1:210959/70‑1 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAgga                                                 >  1:1442323/1‑48 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                             <  1:1335074/70‑1 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                            >  1:713987/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCa                            >  1:2915094/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCa                            >  1:3768554/1‑71 (MQ=255)
                                           aaGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCa                            >  1:3204151/1‑71 (MQ=255)
                                             gCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAcc                          <  1:3019522/71‑1 (MQ=255)
                                             gCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAcc                          <  1:1362889/71‑1 (MQ=255)
                                              cTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAcc                          <  1:3315057/70‑1 (MQ=255)
                                                 gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:82693/51‑1 (MQ=255)
                                                 gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:3682304/51‑1 (MQ=255)
                                                  cgcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcgg                     >  1:3652069/1‑71 (MQ=255)
                                                   gcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggt                    >  1:1192588/1‑71 (MQ=255)
                                                   ccgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggt                    >  1:3143209/2‑71 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                 <  1:1822970/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                 <  1:664090/71‑1 (MQ=255)
                                                      aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                 <  1:1172762/71‑1 (MQ=255)
                                                      aGGACAAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                 <  1:3224042/71‑1 (MQ=255)
                                                       ggACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                 <  1:3921366/70‑1 (MQ=255)
                                                        gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:1287556/44‑1 (MQ=25)
                                                        gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                              <  1:1011179/56‑1 (MQ=255)
                                                          ccAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                                        >  1:2453092/1‑44 (MQ=25)
                                                           cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                                        >  1:3467185/1‑43 (MQ=25)
                                                           cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt            >  1:1718783/1‑71 (MQ=255)
                                                            aaCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                          <  1:3178468/40‑1 (MQ=25)
                                                             aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg                                      <  1:2509934/43‑1 (MQ=255)
                                                                     gTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGAc  <  1:1397829/71‑1 (MQ=255)
                                                                      tCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGttt      <  1:3746252/66‑1 (MQ=255)
                                                                      |                                                                     
GTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGAC  >  W3110S.gb/71015‑71154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: