Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,656,712 C→A 19.5% Q48H (CAG→CAT rspA ← predicted dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,656,7120CA19.5% 126.7 / 12.8 46Q48H (CAG→CATrspApredicted dehydratase
Reads supporting (aligned to +/- strand):  ref base C (17/20);  new base A (4/5);  total (21/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.96e-01

ATATCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGCCCGTAATACCG  >  W3110S.gb/1656659‑1656778
                                                     |                                                                  
atatCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCa                                                                <  1:3876591/58‑1 (MQ=255)
 tatCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACg                                                  >  1:3759709/1‑71 (MQ=255)
 tatCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACg                                                  >  1:1371088/1‑71 (MQ=255)
  atCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACg                                                  >  1:570209/1‑70 (MQ=255)
  atCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACg                                                  >  1:3261715/1‑70 (MQ=255)
  atCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACg                                                  >  1:1980064/1‑70 (MQ=255)
  atCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACg                                                  >  1:416682/1‑70 (MQ=255)
   tCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACgg                                                 >  1:1768879/1‑70 (MQ=255)
    cTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGa                                                >  1:3365171/1‑70 (MQ=255)
     ttCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGa                                                >  1:300905/1‑69 (MQ=255)
       cGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGa                                                <  1:1843732/67‑1 (MQ=255)
       cGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGa                                                <  1:1890004/67‑1 (MQ=255)
        gATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGc                                            <  1:2829907/70‑1 (MQ=255)
        gATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGc                                            <  1:3246011/70‑1 (MQ=255)
                    aTCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGa                               <  1:3312247/71‑1 (MQ=255)
                     tCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:2082243/71‑1 (MQ=255)
                     tCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:1650866/71‑1 (MQ=255)
                     tCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:2668124/71‑1 (MQ=255)
                     tCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTg                                <  1:3829859/69‑1 (MQ=255)
                     tCGCGACCAATAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:2394728/71‑1 (MQ=255)
                       gcgACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAggg                            >  1:2095966/1‑71 (MQ=255)
                       gcgACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAggg                            >  1:1783874/1‑71 (MQ=255)
                           ccAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTc                                     <  1:1780322/58‑1 (MQ=255)
                           ccAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTc                                     <  1:474942/58‑1 (MQ=255)
                            cAATAAGCCGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCa                       <  1:2173036/71‑1 (MQ=255)
                             aaTAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCAt                      <  1:2807741/71‑1 (MQ=255)
                             aaTAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCAt                      <  1:1943610/71‑1 (MQ=255)
                              aTAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:2097863/62‑1 (MQ=255)
                              aTAAGCTGCGGACAAAGGTGATCATGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAggg                            >  1:2129816/1‑64 (MQ=255)
                               tAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCt                                           <  1:1404819/48‑1 (MQ=255)
                                aaGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:493891/60‑1 (MQ=255)
                                    tGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:3452921/56‑1 (MQ=255)
                                    tGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAg                              <  1:3759704/56‑1 (MQ=255)
                                      cGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGc             <  1:1799183/71‑1 (MQ=255)
                                          cAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGCCCGt         <  1:4038119/71‑1 (MQ=255)
                                           aaaGTTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCAt                                  >  1:2443491/1‑45 (MQ=255)
                                           aaaGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTcc                                    >  1:3083395/1‑43 (MQ=255)
                                           aaaGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCAt                                  >  1:615574/1‑45 (MQ=255)
                                           aaaGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCAt                                  >  1:2908507/1‑45 (MQ=255)
                                           aaaGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCAt                                  >  1:3534276/1‑45 (MQ=255)
                                           aaaGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCAt                                  >  1:1829936/1‑45 (MQ=255)
                                             aGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGCCCGt         <  1:3649234/68‑1 (MQ=255)
                                             aGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGCCCGt         <  1:826715/68‑1 (MQ=255)
                                                 gATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTg                          >  1:3977935/1‑47 (MQ=255)
                                                 gATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTg                          >  1:2197666/1‑47 (MQ=255)
                                                 gATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGCCCGTAATACCg  >  1:659895/1‑71 (MQ=255)
                                                     |                                                                  
ATATCTTCGATACGGTGCGCATCGCGACCAATAAGCTGCGGACAAAGGTGATCCTGCAAATAAGAGGCCACGGAAAGCTCACGTCCATTGAGGGTGGCATCCCCAAGGCCCGTAATACCG  >  W3110S.gb/1656659‑1656778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: