| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,142,075 | T→C | 32.6% | T559A (ACG→GCG) | asmA ← | predicted assembly protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,142,075 | 0 | T | C | 32.6% | 48.5 / 36.9 | 43 | T559A (ACG→GCG) | asmA | predicted assembly protein |
| Reads supporting (aligned to +/- strand): ref base T (9/20); new base C (7/7); total (16/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
GTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGAATATCAAACTG > W3110S.gb/2142006‑2142141 | gTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGtt < 1:2936076/71‑1 (MQ=255) aCTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTAATGGCGcttct > 1:833820/1‑71 (MQ=255) gATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGtttcttt > 1:866069/1‑70 (MQ=255) ccACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAg > 1:2746850/1‑70 (MQ=255) cACTTGCAGGGTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAgg > 1:142095/1‑70 (MQ=255) cACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAgg < 1:860045/70‑1 (MQ=255) cACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGa < 1:800913/71‑1 (MQ=255) cACTTGCAGGCTGTAAATGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAgg < 1:473/70‑1 (MQ=255) tGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGt > 1:1729774/1‑56 (MQ=255) aGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaat < 1:3103740/71‑1 (MQ=255) aGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaat < 1:262919/71‑1 (MQ=255) tGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGt > 1:3146406/1‑71 (MQ=255) ttGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAatcaatca < 1:3729123/64‑1 (MQ=255) ttGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAatcaatca < 1:575892/64‑1 (MQ=255) ttGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAatcaatca < 1:2906061/64‑1 (MQ=255) ttGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAg < 1:878648/65‑1 (MQ=255) tGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAatcaatca < 1:3481670/63‑1 (MQ=255) gAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGtttct > 1:3801411/1‑46 (MQ=255) gAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGtttct > 1:1067875/1‑46 (MQ=255) gAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAg > 1:807948/1‑63 (MQ=255) gAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGt > 1:443882/1‑64 (MQ=255) gAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGt > 1:3705147/1‑64 (MQ=255) aGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTc > 1:1775670/1‑68 (MQ=255) ttGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCtt < 1:1680467/57‑1 (MQ=255) ttGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCtt < 1:1540670/57‑1 (MQ=255) tGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGTAATCAATCAGTTTGCt > 1:1532213/1‑55 (MQ=255) tGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCt > 1:2480234/1‑55 (MQ=255) tGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGcca > 1:1624086/1‑71 (MQ=255) tGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGcca > 1:414019/1‑71 (MQ=255) tGCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGcca > 1:1539158/1‑71 (MQ=255) gCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAg < 1:2309469/48‑1 (MQ=255) gCCATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGccac > 1:974628/1‑71 (MQ=255) ccATAAACCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGt < 1:3179501/61‑1 (MQ=255) aaCCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCtt > 1:3736283/1‑49 (MQ=255) aaCCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACgc > 1:3256743/1‑70 (MQ=255) aaCCCGCAGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGa > 1:395392/1‑71 (MQ=255) cGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCg < 1:1120933/71‑1 (MQ=255) cAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGaa < 1:2438259/71‑1 (MQ=255) aGCGGTACTGGCGCTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGAat < 1:1803193/71‑1 (MQ=255) gTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCg < 1:1969305/64‑1 (MQ=255) tACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGc < 1:1134710/35‑1 (MQ=255) tACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGAATATCaa < 1:3946787/71‑1 (MQ=255) cTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCg < 1:3185329/61‑1 (MQ=255) cTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCg < 1:832203/61‑1 (MQ=255) gCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGtt < 1:3653440/40‑1 (MQ=255) gCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGtt < 1:1938605/40‑1 (MQ=255) gCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGAATATCAAACTg < 1:2795125/70‑1 (MQ=255) gCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGAATATCAAACTg < 1:3424867/70‑1 (MQ=255) gCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTGCCAGCCACCCACGACCCGAATATCAAACt < 1:2024987/69‑1 (MQ=255) tttctttcAGGAAATCAATCAGTTTGCTTTCCCCGtt < 1:1893139/37‑1 (MQ=255) | GTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCTTTCCCCGTTCCAGCCACCCACGACCCGAATATCAAACTG > W3110S.gb/2142006‑2142141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |