| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,257,455 | C→T | 10.2% | G9R (GGA→AGA) | yeiJ ← | predicted nucleoside transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,257,455 | 0 | C | T | 10.2% | 321.0 / 20.1 | 108 | G9R (GGA→AGA) | yeiJ | predicted nucleoside transporter |
| Reads supporting (aligned to +/- strand): ref base C (42/54); new base T (5/6); total (48/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
ACGGTACGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGCCCA > W3110S.gb/2257385‑2257524 | aCGGTACGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTcc < 1:2059712/71‑1 (MQ=255) cGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGaa < 1:3509983/70‑1 (MQ=255) cTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTtct < 1:3565190/71‑1 (MQ=255) cTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTtct < 1:156936/71‑1 (MQ=255) tGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTtct > 1:2188691/1‑70 (MQ=255) aTCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAacac < 1:3261246/64‑1 (MQ=255) aTCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAacac < 1:3125751/64‑1 (MQ=255) aTCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAacac < 1:489733/64‑1 (MQ=255) cttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAacac < 1:311547/62‑1 (MQ=255) cttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAacac < 1:619141/62‑1 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCCTTCCCAGAACACTTCTCATGa > 1:1376905/1‑70 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:2193895/56‑1 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGaa < 1:366594/58‑1 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGaa < 1:2200863/58‑1 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGaa < 1:63978/58‑1 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCa > 1:2507831/1‑67 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCa > 1:1911560/1‑67 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCa > 1:3191328/1‑67 (MQ=255) ttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGa > 1:163955/1‑70 (MQ=255) cttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCAt < 1:374356/66‑1 (MQ=255) cttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACAt > 1:727116/1‑71 (MQ=255) ttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGa > 1:2499807/1‑67 (MQ=255) ttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGa > 1:3829115/1‑67 (MQ=255) ttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCACAGAACACTTCTCATGa > 1:3712275/1‑67 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATc < 1:3214471/69‑1 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATc < 1:1846967/69‑1 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATc < 1:4056654/69‑1 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATc < 1:3505605/69‑1 (MQ=255) cttGTTTACTGACAGTAAAAACCCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCa > 1:3092092/1‑71 (MQ=255) gTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCa < 1:3127627/68‑1 (MQ=255) gTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAg > 1:4011574/1‑71 (MQ=255) gTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAg > 1:2754743/1‑71 (MQ=255) gTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAg > 1:741578/1‑71 (MQ=255) cTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGAt < 1:978167/70‑1 (MQ=255) cTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGAt < 1:746810/70‑1 (MQ=255) gACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGAt < 1:3378073/68‑1 (MQ=255) aCAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCa < 1:1185995/60‑1 (MQ=255) aCAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCa < 1:643626/60‑1 (MQ=255) aCAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCa < 1:561433/60‑1 (MQ=255) aCAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTAt > 1:1168228/1‑70 (MQ=255) aGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGaa > 1:3461793/1‑40 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:2067656/37‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:1096120/37‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:80438/37‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:803252/37‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:1753189/37‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:2021978/37‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCCCAg < 1:3638498/37‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCtt < 1:1704183/71‑1 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGa > 1:3630320/1‑49 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATa > 1:475297/1‑57 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCtt > 1:2430538/1‑70 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:1323153/1‑71 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTc < 1:2988015/70‑1 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTc > 1:1542860/1‑70 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:1116153/1‑71 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:3821693/1‑71 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:3743299/1‑71 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:2554153/1‑71 (MQ=255) cGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCa < 1:3719035/50‑1 (MQ=255) gCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:1306318/71‑1 (MQ=255) gCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:1688499/71‑1 (MQ=255) gCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:2818059/71‑1 (MQ=255) cAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCat < 1:2183000/71‑1 (MQ=255) aaTCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCat < 1:3683798/70‑1 (MQ=255) tCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCa < 1:1950694/45‑1 (MQ=255) tCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCa < 1:1517453/45‑1 (MQ=255) cGTCAGCAATACCACCATTCCCATAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTg > 1:2759593/1‑71 (MQ=255) cGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTg > 1:72867/1‑71 (MQ=255) cGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTg > 1:791953/1‑71 (MQ=255) tCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:4059606/64‑1 (MQ=255) tCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:905836/64‑1 (MQ=255) tCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:1503027/64‑1 (MQ=255) tCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:2513625/64‑1 (MQ=255) aGCAATTCCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCata > 1:961/1‑64 (MQ=255) aGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCAt > 1:1216985/1‑58 (MQ=255) aGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGc < 1:2238674/70‑1 (MQ=255) gCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGc < 1:3756728/69‑1 (MQ=255) cAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGAc > 1:222650/1‑71 (MQ=255) cAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGAc > 1:3919992/1‑71 (MQ=255) tACCACCATTCCCAGAACACTTCTCATGACATCCATAGt < 1:2231044/39‑1 (MQ=255) tACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:2130435/57‑1 (MQ=255) ccaccaTTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt < 1:3966125/71‑1 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGa > 1:1113986/1‑39 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCata > 1:1209421/1‑57 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt > 1:1634370/1‑71 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt < 1:3757769/71‑1 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt > 1:150694/1‑71 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt > 1:3111159/1‑71 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCt < 1:2142487/70‑1 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCt > 1:2803425/1‑70 (MQ=255) ccaccaTTCCAAGAACACTTCTCATGACATCCATAGTGa > 1:1698973/1‑39 (MQ=255) ccacaaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt > 1:2153620/1‑71 (MQ=255) ccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCt < 1:3636241/71‑1 (MQ=255) aTTCCCAGAACACTTCTCATGACATCCATAGTGAt < 1:3373563/35‑1 (MQ=255) aTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGc < 1:2562209/71‑1 (MQ=255) ttCTCAGAACACTTCTCATGACATCCATAGTGATTAt > 1:1077343/1‑37 (MQ=255) ttCTCAGAACACTTCTCATGACATCCATAGTGATTAt > 1:1178357/1‑37 (MQ=255) ttCTCAGAACACTTCTCATGACATCCATAGTGATTAt > 1:1072645/1‑37 (MQ=255) cccAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGCCCa > 1:3143823/1‑71 (MQ=255) | ACGGTACGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGCCCA > W3110S.gb/2257385‑2257524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |