Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | W3110S.gb | 3,031,910 | A→G | 29.2% | N64D (AAC→GAC) | idi → | isopentenyl diphosphate isomerase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 3,031,910 | 0 | A | G | 29.2% | 30.3 / 15.4 | 24 | N64D (AAC→GAC) | idi | isopentenyl diphosphate isomerase |
Reads supporting (aligned to +/- strand): ref base A (9/8); new base G (3/4); total (12/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATGCCAAAGGACAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCGCCGTTGCCGT > W3110S.gb/3031842‑3031975 | aTGCCAAAGGACAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTaa < 1:2400584/70‑1 (MQ=255) ccAAAGGACAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCg > 1:237206/1‑71 (MQ=255) ggACAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTtg < 1:2212211/71‑1 (MQ=255) gACAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTtgt > 1:1403042/1‑71 (MQ=255) aCAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTGACTCGGTTtgtg < 1:1961411/71‑1 (MQ=255) aCAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTtgtg < 1:2221959/71‑1 (MQ=255) cAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTGACTCGGTTTGTgg > 1:294090/1‑71 (MQ=255) tattaGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTGACTCGGTTTGTgg > 1:2834152/1‑67 (MQ=255) tattaGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTGACTCGGTTTGTGGGCAc > 1:1918195/1‑71 (MQ=255) attaGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCAcc > 1:602100/1‑71 (MQ=255) attaGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCAcc > 1:331761/1‑71 (MQ=255) attaGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCAcc > 1:1601255/1‑71 (MQ=255) gTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCcac < 1:2255412/70‑1 (MQ=255) aCCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACt > 1:3116351/1‑71 (MQ=255) cACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTGACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGc < 1:1888042/71‑1 (MQ=255) cTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTtg < 1:3218722/44‑1 (MQ=255) cTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTtg < 1:295870/44‑1 (MQ=255) aGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACg < 1:364693/70‑1 (MQ=255) aaaaGCATGGCCTGGCGTGTGGACTGACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGAc < 1:1337067/70‑1 (MQ=255) aaaGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGAc > 1:2101447/1‑69 (MQ=255) aaaGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACg > 1:1129978/1‑70 (MQ=255) cATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTg < 1:2061219/71‑1 (MQ=255) aTGGCCTGGCGTGTGGACTGACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGa < 1:2091746/71‑1 (MQ=255) gCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATcc < 1:3526708/71‑1 (MQ=255) ggCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATccgccg > 1:772279/1‑71 (MQ=255) gactgactCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCgccgttgccgt > 1:270088/1‑70 (MQ=255) gactgactCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCgccgttgccgt > 1:3261844/1‑70 (MQ=255) gactgactCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCgccgttgccgt > 1:1900874/1‑70 (MQ=255) | ATGCCAAAGGACAATTATTAGTTACCCGCCGCGCACTGAGCAAAAAAGCATGGCCTGGCGTGTGGACTAACTCGGTTTGTGGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCGCCGTTGCCGT > W3110S.gb/3031842‑3031975 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |