| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,389,988 | C→T | 32.3% | intergenic (+13/+31) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,389,988 | 0 | C | T | 32.3% | 40.8 / 26.6 | 34 | intergenic (+13/+31) | tyrR/tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| Reads supporting (aligned to +/- strand): ref base C (8/15); new base T (9/2); total (17/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.55e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAA > W3110S.gb/1389923‑1390052 | ttGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGa < 1:2314200/69‑1 (MQ=255)ttGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCt < 1:146625/67‑1 (MQ=255) gCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATg > 1:3788806/1‑69 (MQ=255) gCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGt > 1:1169144/1‑71 (MQ=255) aTAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTg < 1:3419913/62‑1 (MQ=255) aTAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTg < 1:1618379/62‑1 (MQ=255) aTAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTg < 1:397702/62‑1 (MQ=255) tAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCaa > 1:561649/1‑70 (MQ=255) aaGTTGCGGGAATATGGTCTGAGTCATAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAaca > 1:3694283/1‑71 (MQ=255) gCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCAt > 1:3315133/1‑70 (MQ=255) gCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCAt > 1:412208/1‑70 (MQ=255) cGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATc < 1:566893/70‑1 (MQ=255) cGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATc < 1:2226273/70‑1 (MQ=255) cGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATc < 1:2104557/70‑1 (MQ=255) cGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATc < 1:3429665/70‑1 (MQ=255) cGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATc < 1:1276897/70‑1 (MQ=255) ggAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAgg < 1:821391/71‑1 (MQ=255) aaTATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCa > 1:2800912/1‑71 (MQ=255) tGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCatat > 1:3027274/1‑70 (MQ=255) tGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCatat > 1:1875353/1‑70 (MQ=255) gTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCATATTa > 1:431544/1‑70 (MQ=255) aGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTa < 1:297282/70‑1 (MQ=255) agaagaagaACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCATATTAAATTATGCtt > 1:2607872/1‑71 (MQ=255) aagaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTa > 1:3599538/1‑64 (MQ=255) agaagaaCGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCATATTAAATTATGCttt > 1:3263981/1‑69 (MQ=255) agaagaaCGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCATATTAAATTATGCttt > 1:2653508/1‑69 (MQ=255) gaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCAt < 1:3269056/46‑1 (MQ=255) gaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCAt < 1:2887348/46‑1 (MQ=255) gaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCAt < 1:3050264/46‑1 (MQ=255) gaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAg < 1:2753129/71‑1 (MQ=255) gaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTa > 1:4026774/1‑70 (MQ=255) aaGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGc > 1:2256118/1‑69 (MQ=255) aaGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCa > 1:487339/1‑44 (MQ=255) atatGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTaa < 1:2979439/71‑1 (MQ=255) | TTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAA > W3110S.gb/1389923‑1390052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |