| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 67 (1.730) | 33 (1.190) +AGGGTCCCTAAGTC |
13/74 | NT | 54.0% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 11 (0.280) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
GCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71201‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAT > W3110S.gb/3464879‑3464926 |||||||||||||| GCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTC < 1:2515457/71‑1GCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTC < 1:1207857/71‑1GCCCGAGCGAGTTCCGTGCCGGTTCTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTC < 1:2490515/71‑1 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:845076/1‑71 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:42404/1‑71 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:721804/1‑71 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:1481664/1‑71 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTC < 1:2341143/70‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:2987038/1‑70 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG < 1:136428/71‑1 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG < 1:3382797/71‑1 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG < 1:1649065/71‑1 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG < 1:1099933/71‑1 CGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG < 1:1682446/70‑1 CGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG < 1:175977/70‑1 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:3535062/2‑65 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:561297/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:1136674/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:414044/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:3695466/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:2461325/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:2612981/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:2485509/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:143313/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:2909325/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:835844/71‑1 CCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:1161921/1‑69 TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:219469/1‑55 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:979592/71‑1 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGT < 1:1097830/70‑1 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGT < 1:205781/69‑1 TGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTG < 1:1149293/71‑1 TGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:2870991/60‑1 AATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAG > 1:2596133/1‑71 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:2293174/62‑1 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:171710/62‑1 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:1903118/62‑1 ATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTT < 1:691378/71‑1 GTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTATA < 1:779404/71‑1 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA > 1:3678178/1‑52 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA > 1:668736/1‑52 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA > 1:1802484/1‑52 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:875521/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:1871844/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:3674244/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:312900/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:2190955/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT > 1:3525458/1‑53 TGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:2898179/1‑67 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:2347391/43‑1 AAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGA > 1:62212/1‑62 AAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTG > 1:1052370/1‑61 AAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA > 1:2114434/1‑44 TCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTATA < 1:775096/52‑1 CCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAc > 1:394357/1‑55 AGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTC > 1:1878581/1‑40 |||||||||||||| GCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71201‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAT > W3110S.gb/3464879‑3464926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |