| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 61 (1.610) | 17/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173495‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920278‑3920346 GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:1338302/71‑1 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA < 1:2456940/71‑1 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA < 1:1414821/71‑1 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA < 1:2142273/71‑1 CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA < 1:3327380/71‑1 TCAGTCCTTAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA < 1:420150/70‑1 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT > 1:33241/1‑71 AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC < 1:2051665/69‑1 GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:2035402/65‑1 GTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA < 1:730140/65‑1 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:350739/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:1872947/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:3506716/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:2706179/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:2180414/1‑70 CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTT > 1:2245355/1‑70 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:631384/1‑55 ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:3336221/1‑55 TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATC > 1:2474668/1‑71 AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGT < 1:1409087/70‑1 AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:1716208/1‑48 AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA > 1:3246314/1‑48 AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACtt > 1:3166122/1‑47 ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:507424/71‑1 ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:627266/71‑1 ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:2771897/71‑1 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:422421/1‑38 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:2566915/1‑38 GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACA > 1:3300827/1‑38 TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:2506041/1‑70 TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:1110220/1‑70 TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:350164/1‑70 TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:3689873/1‑70 TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCG > 1:784412/1‑70 CCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCC < 1:3452415/71‑1 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA > 1:2447534/1‑46 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA > 1:3049713/1‑46 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA > 1:56541/1‑46 CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA > 1:649320/1‑46 ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGC < 1:65647/71‑1 ATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG > 1:2857883/1‑70 TATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGAT < 1:1571628/49‑1 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTTATGAAGCCGAAGCCTTTGTCAGCGTT > 1:3476169/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:3290762/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:489490/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:935532/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:376458/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:955967/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:316183/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:1121540/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:1566727/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:2373201/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:1642683/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT > 1:2595863/1‑71 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:1733684/1‑46 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:670870/1‑46 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:1413479/1‑46 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:1277443/1‑46 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:198095/1‑46 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:551646/1‑46 TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGA > 1:3548487/1‑46 TTACGTGGGTAGGATCACACATATTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAG > 1:504670/1‑67 TTACGTGGGTAGGATCAAACATCTTTAGAGCCATCGTC > 1:3130636/1‑38 TACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG > 1:2960454/1‑39 TACGTGGGTAGGATCACACATCTTTAGAGCCATAGTCAG > 1:672271/1‑39 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:1635969/70‑1 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG > 1:2303965/1‑70 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:13847/70‑1 ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG < 1:2813776/70‑1 GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:1516422/1‑71 GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:2771748/1‑71 GGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:1719641/1‑71 GGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA < 1:406003/70‑1 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA < 1:1885315/42‑1 GTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA < 1:487618/42‑1 TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT < 1:3525349/71‑1 TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT < 1:2079269/71‑1 TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT < 1:1303325/71‑1 TAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT < 1:2788097/71‑1 GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAA < 1:3207283/39‑1 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:635312/71‑1 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:2540430/71‑1 GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC < 1:1202105/71‑1 TCACACATCTTTAGAGCCATCGTCAGTAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA < 1:3550504/71‑1 TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA < 1:1747267/71‑1 TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA < 1:3453329/71‑1 TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA < 1:2495545/71‑1 TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA < 1:3220188/71‑1 ACACATCTTTAGAGCCATCGTTAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACC > 1:1165920/1‑60 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:3693061/1‑61 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:3616723/1‑61 ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCA > 1:3052037/1‑61 GCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2173495‑2173564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > W3110S.gb/3920278‑3920346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |