| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 1 (0.030) | 16 (0.500) | 6/84 | NT | 78.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 8 (0.250) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAA > W3110S.gb/4547294‑4547429 | ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:569726‑M1/1‑1 (MQ=255)ctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:7245‑M1/1‑1 (MQ=255)aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:696017‑M1/71‑1 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:614572‑M1/4‑1 (MQ=255) actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:2190963‑M1/65‑65 (MQ=255) actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:1728653‑M1/65‑65 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:3110745‑M1/7‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:2584003‑M1/7‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaaaactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:627919‑M1/7‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:437730‑M1/1‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:471934‑M1/1‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:756607‑M1/1‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:36558‑M1/1‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:2202279‑M1/1‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:3335592‑M1/71‑5 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:2932071‑M1/71‑5 (MQ=255) gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttg < 1:2482790‑M1/71‑6 (MQ=255) agGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:2576966‑M1/1‑65 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:3281883‑M1/55‑70 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:42884‑M1/55‑70 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:1409573‑M1/47‑71 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:2728191‑M1/47‑71 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:2461939‑M1/46‑61 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:3032598‑M1/46‑61 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:2296862‑M1/46‑61 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:3025396‑M1/46‑70 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 1:1107526‑M1/18‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 1:2095614‑M1/18‑1 (MQ=255) tATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaag > 1:108318‑M1/1‑50 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:455574‑M1/61‑13 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:3147193/1‑71 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcat > 1:1229868‑M1/1‑46 (MQ=255) acactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:522083‑M1/35‑44 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:317524‑M1/46‑5 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:145562‑M1/46‑5 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATT < 1:646367‑M1/35‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATT < 1:674562‑M1/35‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATT < 1:770717‑M1/35‑1 (MQ=255) aaaaagtAAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:1469477‑M1/44‑5 (MQ=255) ctgcacagttttcccccataagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt > 1:2714667‑M1/32‑68 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt > 1:1468642‑M1/32‑68 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:989767‑M1/1‑35 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:229794‑M1/1‑35 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGG > 1:2238050‑M1/1‑35 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:3283453‑M1/29‑37 (MQ=255) agttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGtatttttct < 1:244331‑M1/45‑3 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:3254138‑M1/1‑34 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:111557‑M1/1‑34 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATaaaaa > 1:3573191‑M1/15‑71 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATaaaaa > 1:681133‑M1/15‑71 (MQ=255) agatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAata < 1:605870‑M1/59‑1 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTaaaa > 1:1037531‑M1/6‑70 (MQ=255) aacatTTGGGCCCAAACTGTCCATATCATAAATAAGTTACGTATTTTT‑CTCAAGCATAAAAATATTaaaa > 1:3327702‑M1/6‑70 (MQ=255) ttGGGGCCAttttcactcatagaggaaagcatcgcggacaaactttttcagttt < 1:1034365‑M1/54‑46 (MQ=255) | ATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAA > W3110S.gb/4547294‑4547429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |