| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 45 (1.160) | 112 (3.150) | 27/94 | NT | 70.4% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 53 (1.490) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
Only 100 of 205 total aligned reads displayed.
GGCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGC > W3110S.gb/4125270‑4125409 | ggcACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAaata < 1:2256549/71‑1 (MQ=255) gcACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAaata < 1:1056578/70‑1 (MQ=255) gCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:827735‑M2/1‑70 (MQ=255) gCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:2065477‑M2/1‑70 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt > 1:2186157‑M2/1‑68 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:3077421‑M2/71‑4 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:2678432‑M2/71‑4 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAatt < 1:3565572‑M2/71‑4 (MQ=255) acacGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAat < 1:3143340‑M2/70‑3 (MQ=255) cGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATtctc < 1:617827/71‑1 (MQ=255) gTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc > 1:44126‑M2/1‑64 (MQ=255) tAAAAAGGTGGACGATCTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagc < 1:2718196‑M2/70‑8 (MQ=255) tAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCCCCCGCGAAAAAATAattcagc < 1:2938286‑M2/70‑8 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:1236754‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:944664‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:842645‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:116473‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:590714‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:1115459‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:395383‑M2/1‑59 (MQ=255) aaGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaaga > 1:2982049‑M2/1‑59 (MQ=255) aGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagac > 1:877795‑M2/1‑58 (MQ=255) ggTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagaca > 1:1613088‑M2/1‑57 (MQ=255) ggTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagaca > 1:1548563‑M2/1‑57 (MQ=255) ggTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagaca > 1:3054493‑M2/1‑57 (MQ=255) gTGGACGAACTGCTGGTTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagaca < 1:2197918‑M2/70‑15 (MQ=255) gTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacac > 1:89588‑M2/1‑56 (MQ=255) gTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacac < 1:1804233‑M2/71‑16 (MQ=255) gTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcacctaagacac < 1:534260‑M2/71‑16 (MQ=255) gTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAg > 1:864727/1‑71 (MQ=255) gTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAg > 1:2458555/1‑71 (MQ=255) gTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCT‑AAGGAGAAGc > 1:1691582/1‑71 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactt > 1:15544‑M2/1‑53 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactg > 1:1302583‑M2/1‑53 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactg > 1:1230235‑M2/1‑53 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg > 1:2931728/1‑70 (MQ=255) gACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCg > 1:471481/1‑70 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactg > 1:3315487‑M2/1‑52 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAa > 1:1075168‑M2/1‑52 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCa < 1:35445/59‑1 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCa < 1:2385611/59‑1 (MQ=255) aCGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAg < 1:2117702/61‑1 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactgga < 1:2641889‑M2/71‑25 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactgga < 1:804744‑M2/71‑25 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactgga < 1:2742789‑M2/71‑25 (MQ=255) ctgctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:3025021/1‑71 (MQ=255) ctgGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAg < 1:2612631/71‑1 (MQ=255) gCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGt < 1:3700983/69‑1 (MQ=255) tttGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTAttt > 1:1460272/1‑71 (MQ=255) tGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:173463/70‑1 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaa > 1:2912509‑M2/1‑36 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaa > 1:1926570‑M2/1‑36 (MQ=255) gTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagacgaa > 1:3373987‑M2/1‑36 (MQ=255) ccAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:3305320‑M2/1‑29 (MQ=255) ccAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:791467‑M2/1‑29 (MQ=255) ccAGGAGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattg > 1:1303956‑M2/1‑29 (MQ=255) ggAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:2266695/1‑50 (MQ=255) ggAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGaaa > 1:1415476/1‑50 (MQ=255) gAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:2419366/58‑1 (MQ=255) aGTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagtt > 1:2841897‑M2/1‑24 (MQ=255) aGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTg < 1:1682966/57‑1 (MQ=255) gTCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagtt < 1:1895127‑M2/70‑48 (MQ=255) tCGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttga < 1:243598‑M2/71‑50 (MQ=255) cGTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttg < 1:3278997‑M2/69‑49 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:2522163‑M2/70‑51 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:3227399‑M2/70‑51 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:339144‑M2/70‑51 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:1425721‑M2/70‑51 (MQ=255) gTTTCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat < 1:1140403‑M2/70‑51 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCgg > 1:3341440/1‑38 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCgg > 1:3520686/1‑38 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:2813019/1‑54 (MQ=255) gTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:2868717/1‑54 (MQ=255) tttCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat > 1:45991‑M2/1‑19 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagattaaaacgattgaagttgatgat < 1:1597427‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:978845‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:722883‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgat < 1:3486295‑M2/70‑54 (MQ=255) tCACCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaa < 1:208112‑M2/53‑37 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGAt > 1:9602/1‑52 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGc > 1:695649/1‑55 (MQ=255) tCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCg > 1:2406095/1‑71 (MQ=255) aCCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaa > 1:347760‑M2/1‑15 (MQ=255) aCCCGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaa > 1:2334104‑M2/1‑15 (MQ=255) cccGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaac > 1:2567332‑M2/1‑14 (MQ=255) cccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:2582324/1‑48 (MQ=255) cccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:2684197/1‑48 (MQ=255) cccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGa > 1:3418698/1‑48 (MQ=255) cccGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTGGa > 1:1292936/1‑48 (MQ=255) ccGCGAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgat > 1:1210811‑M2/1‑13 (MQ=255) cgcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc < 1:3608032‑M2/71‑60 (MQ=255) cgcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactc < 1:967673‑M2/71‑60 (MQ=255) cgcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGa > 1:3246610/1‑71 (MQ=255) cgcgAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGa > 1:249204/1‑71 (MQ=255) gcgAAAAAATAattcagctaagacactgcactggattaagatgaaaacgattga > 1:1013915‑M2/1‑11 (MQ=255) aaaaTAattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagc < 1:2748490‑M2/71‑66 (MQ=255) aataattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagcta > 1:3717481‑M2/1‑4 (MQ=255) aataattcagctaagacactgcactggattaagatgaaaacgattgaagttgatgatgaactctacagcta > 1:202530‑M2/1‑4 (MQ=255) taatTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGc > 1:740343/1‑71 (MQ=255) aatTCTCAAGGAGAAGCGGATGAAAAAGTATTTTATTGCCCCCTCAAt < 1:3582461/48‑1 (MQ=39) | GGCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGATGAAACAGTATTTGATTGCCCCCTCAATTCTGTCGGCTGATTTTGCCCGC > W3110S.gb/4125270‑4125409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |