| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,618,668 | A→G | 6.9% | intergenic (+76/‑74) | yneK → / → ydeA | hypothetical protein/predicted arabinose transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,618,668 | 0 | A | G | 6.9% | 163.5 / 3.8 | 58 | intergenic (+76/‑74) | yneK/ydeA | hypothetical protein/predicted arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base A (31/23); new base G (2/2); total (33/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
TTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGAT > W3110S.gb/1618602‑1618733 | ttACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATg < 1:1288823/69‑1 (MQ=255)ttACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGc < 1:410032/70‑1 (MQ=255)ttACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGc < 1:1968352/70‑1 (MQ=255) ccGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTg < 1:3263673/71‑1 (MQ=255) ccGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTg < 1:31870/71‑1 (MQ=255) cGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGt < 1:259330/71‑1 (MQ=255) cGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGt < 1:1716717/71‑1 (MQ=255) gACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTa < 1:2890081/71‑1 (MQ=255) tGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcac < 1:2254811/69‑1 (MQ=255) aaaGAGTCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:2871853/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGTTCACAAATGCATTGTATTCACATCATTAACCg > 1:1550063/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:3410619/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:3261226/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:3446625/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:2306154/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:1143875/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:1638023/1‑71 (MQ=255) aaaGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg > 1:1519073/1‑71 (MQ=255) aGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGtt > 1:169126/1‑71 (MQ=255) aGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAAc > 1:1769013/1‑61 (MQ=255) agagAAACGGAAAACGCGATCCAGATCACAAGTGCATTGTATTCACATCATTAACCGTTTTAAGATCAttt > 1:3011263/1‑71 (MQ=255) agagAAACGGAAAACGCGATCCAGATCACAAGTGCATTGTATTCACATCATTAACCGTTTTAAGATCAttt > 1:2722056/1‑71 (MQ=255) agagAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCAtt < 1:3442091/70‑1 (MQ=255) agagAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCAtt < 1:1520612/70‑1 (MQ=255) agagAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCAtt < 1:3289888/70‑1 (MQ=255) aaaCGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGAt < 1:2456957/62‑1 (MQ=255) aaaCGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGAt < 1:2538464/62‑1 (MQ=255) aaaCGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGAt < 1:3726109/62‑1 (MQ=255) aaaCGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTtcat > 1:3328154/1‑70 (MQ=255) aCGGAAAACGCGATCCAGATCACAAGTGCATTGTATTCA‑TTCATTAACCGTTTTAAGATCATTTCATCACt < 1:2438339/71‑1 (MQ=255) gAAAACGCGATCCAGATCACAAGTGCATTGTATTCACATCATTAACCGTTTTAAGATCAt < 1:1108131/60‑1 (MQ=255) aaCGCGATCCAGATCACAAATGCATTGTATTCAcatca > 1:3271474/1‑38 (MQ=255) aaCGCGATCCAGATCACAAATGCATTGTATTCAcatca > 1:3256183/1‑38 (MQ=255) aaCGCGATCCAGATCACAAATGCATTGTATTCAcatca > 1:3350596/1‑38 (MQ=255) aaCGCGATCCAGATCACAAATGCATTGTATTCAcatca > 1:1866759/1‑38 (MQ=255) aaCGCGATCCAGATCACAAATGCATTGTATTCAcatca > 1:2398671/1‑38 (MQ=255) aaCGCGATCCAGATCACAAATGCATTGTATTCAcatca > 1:2112158/1‑38 (MQ=255) aCGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCg > 1:610516/1‑71 (MQ=255) aCGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCg > 1:1472304/1‑71 (MQ=255) aCGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCg > 1:3577145/1‑71 (MQ=255) aCGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATATCATCACTTTTTCg > 1:1614523/1‑71 (MQ=255) cgcgATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCg > 1:1507176/1‑70 (MQ=255) cgcgATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGc < 1:3502501/71‑1 (MQ=255) cgcgATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGc < 1:529167/71‑1 (MQ=255) cgcgATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGc < 1:280953/71‑1 (MQ=255) cgcgATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGc < 1:2902859/71‑1 (MQ=255) cgcgATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGc < 1:1009414/71‑1 (MQ=255) ccAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCa < 1:3205228/48‑1 (MQ=255) ccAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCa < 1:1736717/48‑1 (MQ=255) ccAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCa < 1:729395/48‑1 (MQ=255) aGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCAtt > 1:2656223/1‑48 (MQ=255) aGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCAtt > 1:1209890/1‑48 (MQ=255) tCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGa > 1:3597256/1‑71 (MQ=255) tCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGa > 1:487361/1‑71 (MQ=255) cacaAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGa > 1:3539243/1‑70 (MQ=255) acaAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGAt > 1:3026182/1‑70 (MQ=255) acaAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGAt > 1:242114/1‑70 (MQ=255) acaAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGAt > 1:561381/1‑70 (MQ=255) | TTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGAT > W3110S.gb/1618602‑1618733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |