| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,682,586 | A→G | 68.0% | Q439R (CAG→CGG) | ydgI → | predicted arginine/ornithine antiporter transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,682,586 | 0 | A | G | 68.0% | 84.0 / 60.2 | 69 | Q439R (CAG→CGG) | ydgI | predicted arginine/ornithine antiporter transporter |
| Reads supporting (aligned to +/- strand): ref base A (10/12); new base G (29/17); total (40/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.04e-01 | |||||||||||
CACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCT > W3110S.gb/1682520‑1682643 | cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCggg > 1:1285880/1‑69 (MQ=255)cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGa < 1:2074903/70‑1 (MQ=255)cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGa > 1:1441780/1‑70 (MQ=255)cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGa > 1:1752375/1‑70 (MQ=255)cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGa < 1:1974516/70‑1 (MQ=255)cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGa > 1:1195086/1‑70 (MQ=255)cACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGa < 1:1077414/70‑1 (MQ=255) ccGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAAt > 1:738377/1‑71 (MQ=255) ctgctgGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCt < 1:727135/71‑1 (MQ=255) gTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTgg < 1:1969822/71‑1 (MQ=255) gTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTgg < 1:144686/71‑1 (MQ=255) tGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATg < 1:2490390/68‑1 (MQ=255) tGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATg < 1:2025530/68‑1 (MQ=255) tGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATg < 1:514595/68‑1 (MQ=255) tGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATg < 1:332528/68‑1 (MQ=255) tGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATg < 1:336956/68‑1 (MQ=255) tACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:750134/71‑1 (MQ=255) tACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:1004638/71‑1 (MQ=255) tACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:1396990/71‑1 (MQ=255) tACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:1287507/71‑1 (MQ=255) tACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:1206259/71‑1 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCTGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:1293824/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTgac > 1:84450/1‑63 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:2552663/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:1086384/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:3055994/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:1152732/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:805962/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:1733378/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGc > 1:3546234/1‑50 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:3452296/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:2118318/1‑71 (MQ=255) cGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:3137307/1‑71 (MQ=255) cccATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCa > 1:203081/1‑45 (MQ=255) cccATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCa > 1:1394480/1‑45 (MQ=255) cccATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCa > 1:2759235/1‑45 (MQ=255) cccATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGc > 1:3156154/1‑70 (MQ=255) cccATGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGc > 1:3726469/1‑70 (MQ=255) tGATAATGTACTGAACCGTCGGGAAATGGTGCTGa < 1:3648947/35‑1 (MQ=255) tGATAATGTACTGAACCGTCGGGAAATGGTGCTGa < 1:91179/35‑1 (MQ=255) tGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:1936588/48‑1 (MQ=255) tGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:1243792/48‑1 (MQ=255) tGATAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:2533042/48‑1 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTg > 1:1664455/1‑44 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTg > 1:1094781/1‑44 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTg > 1:1099300/1‑44 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTg > 1:636937/1‑44 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTg > 1:1070931/1‑44 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTg > 1:3189622/1‑44 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTaa > 1:212114/1‑48 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTg > 1:1056586/1‑70 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTg > 1:419146/1‑70 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTg > 1:2820061/1‑70 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTg > 1:2516151/1‑70 (MQ=255) aTAATGTACTGAACCGTCGGGAAATGGTGCTGATTGGCATCCTg > 1:824207/1‑44 (MQ=37) aTAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGtt > 1:2223762/1‑59 (MQ=255) aTAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTg > 1:102356/1‑70 (MQ=255) gTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTc > 1:1102716/1‑55 (MQ=255) gTACTGAACCGTCGGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCt > 1:1674096/1‑71 (MQ=255) tACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCt < 1:2976957/70‑1 (MQ=255) cTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGtt < 1:648523/38‑1 (MQ=255) cTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGtt < 1:2810204/38‑1 (MQ=255) cTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGtt < 1:206398/38‑1 (MQ=255) cTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGtt < 1:1627960/38‑1 (MQ=255) cTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGtt < 1:909649/38‑1 (MQ=255) gAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTaa > 1:3629888/1‑38 (MQ=255) gAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTaa > 1:3486551/1‑38 (MQ=255) gAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTaa > 1:2420989/1‑38 (MQ=255) aaCCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:3146574/35‑1 (MQ=255) aaCCGTCGGGAAATGGTGCTGATTGGCATGCTGtt < 1:2932981/35‑1 (MQ=255) | CACCGGGGCTGCTGGTTTTCCTGTACGCGCGCAAAACGCATACCCATGATAATGTACTGAACCGTCAGGAAATGGTGCTGATTGGCATGCTGTTAATTGCCTCAGTTCCGGCGACCTGGATGCT > W3110S.gb/1682520‑1682643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |