Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2554255	2554282	28	5 [1]	[0] 4	envC	protease with a role in cell division

CGGCGAGGCTGCGCTCCTGGGCGGCTTTTTGCTGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCAA  >  minE/2554283‑2554351 |                                                                     cggggAGGCTGCGCTCCTGGGCGGCTTTTTGCTGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCaa  <  1:1668249/69‑1 (MQ=255) cggcgAGGCTGCGCTCCTGGGCGGCTTTTTGCTGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCaa  <  1:1401480/69‑1 (MQ=255) cggcgAGGCTGCGCTCCTGGGCGGCTTTTTGCTGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCaa  <  1:1769147/69‑1 (MQ=255) cggcgAGGCTGCGCTCCTGGGCGGCTTTTTGCTGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCaa  <  1:3255185/69‑1 (MQ=255) |                                                                     CGGCGAGGCTGCGCTCCTGGGCGGCTTTTTGCTGCTCCAGTTTGGCAATCGACGCGTTCATCTCATCAA  >  minE/2554283‑2554351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑