| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 9,238 | G→A | 34.7% | intergenic (+47/‑68) | talB → / → mog | transaldolase B/predicted molybdochelatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 9,238 | 0 | G | A | 34.7% | 50.0 / 36.4 | 69 | intergenic (+47/‑68) | talB/mog | transaldolase B/predicted molybdochelatase |
| Reads supporting (aligned to +/- strand): ref base G (42/3); new base A (9/15); total (51/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.12e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGTTTAACGAGACTGTTTAAA > minE/9179‑9292 | cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctgt > 1:3208337/1‑69 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctgt > 1:2644501/1‑69 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctgt > 1:2530757/1‑69 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctgt > 1:733581/1‑69 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctgt > 1:2014885/1‑69 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctgt > 1:1664740/1‑69 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctg < 1:1230009/68‑1 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctg < 1:2295663/68‑1 (MQ=255)cGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctgtctg < 1:2252385/68‑1 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:2083894/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:378912/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:380926/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:2440151/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:601761/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:1613023/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:1315523/1‑60 (MQ=255) ctgctgTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCctg > 1:1411014/1‑60 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1011727/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1619589/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:3055933/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:3358692/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:3401741/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1098695/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:284696/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:2694342/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1261834/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1006743/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1363775/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:64763/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1635318/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCTGTCTGTCACTCCCTTCGCAgtg < 1:1527855/67‑1 (MQ=255) acTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAACCCGTCTGTCACTCCCTTCGCAgtg < 1:794430/67‑1 (MQ=255) aGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATc > 1:2630063/1‑68 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:23116/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:17265/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:1832899/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:1878389/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:802261/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:2145272/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:1539680/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:2443145/1‑36 (MQ=255) ccGGGAAGTCGGTCACGCTACCTCTTCTGAAACctg > 1:869972/1‑36 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:582593/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:590218/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:883078/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:748709/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:2578730/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:3243501/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:1794488/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:2693209/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:2299487/1‑69 (MQ=255) cGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGtt > 1:962286/1‑68 (MQ=255) ggTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGc > 1:2944328/1‑43 (MQ=255) ggTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGc > 1:1177203/1‑43 (MQ=255) ggTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGc > 1:287187/1‑43 (MQ=255) ggTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGc > 1:1970798/1‑43 (MQ=255) ggTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGc > 1:2267825/1‑43 (MQ=255) ggTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGc > 1:2325871/1‑43 (MQ=255) aCGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:1559130/1‑56 (MQ=255) aCGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:482686/1‑56 (MQ=255) aCGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:3389957/1‑56 (MQ=255) cTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGTTTAACGAGACTGTTTaaa > 1:1480639/1‑69 (MQ=255) cTACCTCTTCTGAAGCCTGTCTGTAACTCCCTTCGCAGTGTATCATTCTGTTTAACGAGACTGTTTaaa > 1:2691091/1‑69 (MQ=255) cttctGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:992273/1‑47 (MQ=255) cttctGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:843478/1‑47 (MQ=255) cttctGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:2709896/1‑47 (MQ=255) cttctGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:2904896/1‑47 (MQ=255) cttctGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGttt > 1:3276877/1‑47 (MQ=255) cttctGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGtt > 1:346390/1‑46 (MQ=255) | CGATCTGCTGTAATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTACCTCTTCTGAAGCCTGTCTGTCACTCCCTTCGCAGTGTATCATTCTGTTTAACGAGACTGTTTAAA > minE/9179‑9292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |