| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 667,565 | G→A | 30.3% | V301V (GTG→GTA) | uup → | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 667,565 | 0 | G | A | 30.3% | 40.8 / 18.6 | 46 | V301V (GTG→GTA) | uup | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (24/8); new base A (10/4); total (34/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
ATGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTT > minE/667504‑667619 | aTGAAGTCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:439082/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATggg > 1:2079105/1‑67 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGt > 1:3374372/1‑68 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:1924461/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:2993067/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:2335138/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:2172075/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:2158944/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:52771/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:2108316/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:552704/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:1896074/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:598807/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:1705764/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:1667470/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:605635/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:684876/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:697870/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:1340659/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:830993/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTa > 1:129462/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGGCGCGAAGTGATGGGTa > 1:426860/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGCGAACGTCGCGAAGTGATGGGTa > 1:1334324/1‑69 (MQ=255)aTGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGT‑GTGAACGTCGCGAAGTGATGGGTAc > 1:941090/1‑69 (MQ=255) gCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATggg < 1:2456115/61‑1 (MQ=255) gCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATggg < 1:245157/61‑1 (MQ=255) gCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATggg < 1:3123684/61‑1 (MQ=255) gCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATggg < 1:1736848/61‑1 (MQ=255) tACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATggg < 1:2352968/55‑1 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTgg > 1:2693735/1‑62 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:1155726/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:1596545/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:606647/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:2046403/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:2151626/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:2264788/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:3423396/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:2363854/1‑66 (MQ=255) aGCAATGCGTCGCGAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAagaa > 1:2554601/1‑66 (MQ=255) gcgAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAAGAAGCCAGCCGCTCCg < 1:593131/69‑1 (MQ=255) gcgAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAAGAAGCCAGCCGCTCCg < 1:1601589/69‑1 (MQ=255) gcgAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAAGAAGCCAGCCGCTCCg < 1:2892820/69‑1 (MQ=255) gcgAGCGTGGTGAACGTCGCGAAGTAATGGGTACCGCAAAGATGCAGGTGGAAGAAGCCAGCCGCTCCg < 1:901034/69‑1 (MQ=255) gAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGtt < 1:2278682/69‑1 (MQ=255) gAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGtt < 1:1407732/69‑1 (MQ=255) gAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGtt < 1:1338391/69‑1 (MQ=255) | ATGAAGGCCGCGTACGCGCCCTGAAAGCGATGCGTCGCGAACGTGGTGAACGTCGCGAAGTGATGGGTACCGCAAAGATGCAGGTGGAAGAGGCCAGCCGCTCCGGTAAAATCGTT > minE/667504‑667619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |