| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 756,802 | T→C | 74.8% | T76T (ACT→ACC) | lolE → | outer membrane‑specific lipoprotein transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 756,802 | 0 | T | C | 74.8% | 96.4 / 26.8 | 79 | T76T (ACT→ACC) | lolE | outer membrane‑specific lipoprotein transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (9/11); new base C (30/29); total (39/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 | |||||||||||
ACAACCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTGGATCACGTGCAAAAAGTGCCGGGTATT > minE/756741‑756847 | ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGATCAACTGGc > 1:1962097/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:3205318/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:1851772/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:1726757/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:1604241/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:2480785/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:2485396/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:2496292/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:3097310/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:3348333/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:3369553/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:3395298/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:431358/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:1370479/3‑69 (MQ=255)ataacCGCATTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGc > 1:643823/3‑69 (MQ=255) caacCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGc > 1:92325/1‑68 (MQ=255) caacCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGc > 1:1641517/1‑68 (MQ=255) caacCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGc > 1:535677/1‑68 (MQ=255) caacCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGc > 1:2692861/1‑68 (MQ=255) caacCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGc > 1:463153/1‑68 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAg > 1:574101/2‑68 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:48117/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:573864/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:2169032/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:2000885/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:799365/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1859803/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:2176237/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1412418/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1766529/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1446554/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:118646/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1194334/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1549970/2‑69 (MQ=255) caTTCTGGCGGTAGTACCGCACGGTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGc > 1:1268327/2‑69 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACt > 1:1086869/1‑68 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg > 1:1828168/1‑69 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:3068324/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:2940535/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg > 1:352955/1‑69 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:386464/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:254092/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:2415337/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:1758355/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:1148013/69‑1 (MQ=255) cTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:1599146/69‑1 (MQ=255) cTGGCGGTAGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg > 1:351712/1‑69 (MQ=255) tGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTg < 1:1576130/68‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTTGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:2656106/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGTAAGTGc < 1:439973/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:353259/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:1134456/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:1571300/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:2208094/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:3147865/69‑1 (MQ=255) gTGAAATTGAGGCGGTAGATCAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGc < 1:1442706/69‑1 (MQ=255) aTCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTGGATCACGTGCAAAAAGTGCCggg < 1:1013386/68‑1 (MQ=255) aTCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTGGATCACGTGCAAAAAGTGCCggg < 1:3047302/68‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1285697/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1239736/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1775642/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1354342/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1018152/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1423956/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2957536/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1534650/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2659632/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2655149/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2600867/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2419307/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2327068/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2194064/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2064549/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1726109/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1734598/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1902775/57‑1 (MQ=255) cAGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:1862054/57‑1 (MQ=255) aGCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:2132318/56‑1 (MQ=255) gCCGTGGACCAACTGGCAGGAAGCACTGGATAACGTGCAGAAAGTGCCGGGCAtt < 1:487119/55‑1 (MQ=255) | ACAACCGTATTCTGGCGGTGGTGCCGCATGGTGAAATCGAGGCGGTGGATCAGCCGTGGACTAACTGGCAGGAAGCACTGGATCACGTGCAAAAAGTGCCGGGTATT > minE/756741‑756847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |