| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 762,995 | A→G | 43.3% | L235L (CTT→CTC) | potB ← | polyamine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 762,995 | 0 | A | G | 43.3% | 20.5 / 64.2 | 83 | L235L (CTT→CTC) | potB | polyamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (22/25); new base G (11/25); total (33/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 | |||||||||||
ATCAGGCCCATTACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATA > minE/762930‑763059 | aTCAGGCCCATTACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAgg < 1:525168/69‑1 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGTAACTGGACCtt > 1:1873760/1‑69 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:1101715/1‑69 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:971326/1‑69 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:208059/1‑69 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:1321942/1‑69 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:2148092/1‑69 (MQ=255) tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:881198/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCt > 1:1656989/1‑67 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2292157/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:427283/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:771409/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:1585307/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2824321/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2810771/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2626528/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:1409288/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2352868/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:1281796/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtg > 1:1718994/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtg > 1:1224415/1‑69 (MQ=255) aCGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtg > 1:1214308/1‑69 (MQ=255) aTAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtgat < 1:2443604/68‑1 (MQ=255) cAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGt < 1:996980/68‑1 (MQ=255) aTGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtgatg > 1:3329861/1‑57 (MQ=255) aTGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATc > 1:710423/1‑69 (MQ=255) gCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGAt > 1:1583644/1‑66 (MQ=255) gCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATc > 1:1359435/1‑67 (MQ=255) gCTGGTAGCTGCACCAAACGGCCAGTCACGAAAATTAAGGCACTGGACCTTGATGACGTTAGCGAt > 1:148861/1‑66 (MQ=255) gCTGGTAGCCGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATc > 1:1540217/1‑67 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTTTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2581084/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:243389/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:46268/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:980477/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:246672/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2584195/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:780524/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:274624/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:768763/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2853360/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:3141984/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:349257/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:579471/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:202234/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1388872/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2128788/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2152580/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1459685/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:179824/68‑1 (MQ=255) tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1855843/68‑1 (MQ=255) gCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1769707/57‑1 (MQ=255) ccAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCAt < 1:295305/69‑1 (MQ=255) ccAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCAt < 1:3336006/69‑1 (MQ=255) cAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCAt < 1:1154501/68‑1 (MQ=255) tCACGAATATTGAGCAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2964990/52‑1 (MQ=255) cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:2602473/1‑69 (MQ=255) cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:2381597/1‑69 (MQ=255) cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:3100910/1‑69 (MQ=255) cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:249945/1‑69 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:1838790/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:806390/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:1859984/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:1970421/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:3244024/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2682553/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2448113/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2345247/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2443325/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2322956/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2284584/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2886690/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:3143075/68‑1 (MQ=255) gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGACg < 1:870835/68‑1 (MQ=255) aaTATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGc < 1:2377603/51‑1 (MQ=255) aaTATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGc < 1:2415294/51‑1 (MQ=255) aaTATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGc < 1:1266669/51‑1 (MQ=255) atatTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2028891/46‑1 (MQ=255) tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:2776768/69‑1 (MQ=255) tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:1691765/69‑1 (MQ=255) tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:1972669/69‑1 (MQ=255) tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:9963/69‑1 (MQ=255) ttAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGAt > 1:1277580/1‑66 (MQ=255) ttAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa > 1:446063/1‑67 (MQ=255) | ATCAGGCCCATTACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATA > minE/762930‑763059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |