| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 827,457 | G→A | 27.2% | L18L (CTG→TTG) | narL ← | DNA‑binding response regulator in two‑component regulatory system with NarX (or NarQ) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 827,457 | 0 | G | A | 27.2% | 121.4 / 41.9 | 106 | L18L (CTG→TTG) | narL | DNA‑binding response regulator in two‑component regulatory system with NarX (or NarQ) |
| Reads supporting (aligned to +/- strand): ref base G (60/17); new base A (20/9); total (80/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
ACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGAC > minE/827392‑827524 | aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:386584/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:3237033/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:1983681/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:1846995/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:2791406/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:3309605/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:3420607/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:545884/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:692315/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:88277/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:2533550/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:1134263/1‑69 (MQ=255)aCTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCAt > 1:2456481/1‑69 (MQ=255) ttCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTg < 1:258431/69‑1 (MQ=255) ttCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTg < 1:3210909/69‑1 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:2329561/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:230720/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:1952738/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:2289715/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:2775644/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:2745925/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:2688422/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:3063105/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:3233800/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:3251301/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:1271616/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:3288826/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:905089/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:708075/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:642916/1‑56 (MQ=255) cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:3244063/1‑56 (MQ=255) cACGGTGATATCTCGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAACATCg > 1:1068647/1‑56 (MQ=255) gATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGGAGCATCGGGTGATCGTCAATcagcag > 1:2252272/1‑69 (MQ=255) gATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCTGGTGATCGTCAATca > 1:1605340/1‑65 (MQ=255) gATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATcagcag > 1:1704640/1‑69 (MQ=255) tCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGAt < 1:1670139/68‑1 (MQ=255) aTACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGt < 1:2101726/69‑1 (MQ=255) aTACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGt < 1:3260955/69‑1 (MQ=255) aTACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGt < 1:1054500/69‑1 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCg > 1:3050735/1‑64 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:3009600/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:934262/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:2657766/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:2616711/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:957698/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:2450906/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:1934856/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:220500/1‑68 (MQ=255) cTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:2013008/1‑68 (MQ=255) cTGATAAGCTGCTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:833203/1‑68 (MQ=255) cTGATAAGCTGCTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:800775/1‑68 (MQ=255) cTGATAAGCTGCTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:2711704/1‑68 (MQ=255) cTGATAAGCTGCTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTc > 1:2277988/1‑68 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:120118/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:2455526/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:1273965/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:743193/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:624582/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:1691343/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:3101702/68‑1 (MQ=255) aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:3009845/68‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAtt > 1:3094722/1‑68 (MQ=255) aGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAtt > 1:468257/1‑68 (MQ=255) aGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTa > 1:3029749/1‑69 (MQ=255) aGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTa > 1:2022063/1‑69 (MQ=255) aGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTa > 1:291446/1‑69 (MQ=255) aGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTa > 1:3360819/1‑69 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:2412577/69‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:1340392/69‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:2619668/69‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:2638727/69‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:200091/69‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:136125/69‑1 (MQ=255) aGCTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:1704664/69‑1 (MQ=255) cTGTTTTACGCCAGTTCGCAACATCGGGTGATCGTCGATCAGCAGGATAGTAGCCGGTTCCTGATTa < 1:2971500/67‑1 (MQ=255) tttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGAt < 1:3100282/61‑1 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATcagcag > 1:1923831/1‑40 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACt > 1:293327/1‑64 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACt > 1:323793/1‑64 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACt > 1:3072009/1‑64 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACt > 1:1414465/1‑64 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATg > 1:2763285/1‑68 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATg > 1:1281267/1‑68 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATg > 1:241066/1‑68 (MQ=255) ttACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATg > 1:514821/1‑68 (MQ=255) ttACGACAGTTCGCAGCATCGGGTGATCGTCAATAAGCAGGATAGTAGCCGGTTCCTGATTACTCAta > 1:1533431/1‑67 (MQ=255) aGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTAtctc < 1:2597821/69‑1 (MQ=255) gTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTAtctc < 1:1698408/68‑1 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:3246314/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:2384377/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:1961586/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:199066/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:1564815/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:2359976/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:1954992/1‑69 (MQ=255) cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTg > 1:2203253/1‑69 (MQ=255) agcaTCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGAc < 1:473866/69‑1 (MQ=255) agcaTCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGAc < 1:561992/69‑1 (MQ=255) agcaTCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGAc < 1:1388436/69‑1 (MQ=255) agcaTCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGAc < 1:339805/69‑1 (MQ=255) | ACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGAC > minE/827392‑827524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |