| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 828,872 | G→A | 35.7% | D142D (GAC→GAT) | narX ← | sensory histidine kinase in two‑component regulatory system with NarL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 828,872 | 0 | G | A | 35.7% | 54.2 / 47.1 | 81 | D142D (GAC→GAT) | narX | sensory histidine kinase in two‑component regulatory system with NarL |
| Reads supporting (aligned to +/- strand): ref base G (25/27); new base A (21/8); total (46/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.86e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01 | |||||||||||
AATACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGACAC > minE/828813‑828931 | aaTACCGCCATTACCCGATGTACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:544883/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGGCCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:372156/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:959331/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:1031696/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:1043842/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:910841/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:906150/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:728700/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:712874/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:1582046/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:2324725/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:2001434/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:1025059/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:2149395/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:23023/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:2951080/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:456633/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:498404/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:1301016/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:1274542/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:1091536/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGTACCACCGTCTCGATGCGCATTTCCGTGGTGCGGTCaaa > 1:1198166/1‑65 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:590732/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:3410403/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:818402/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:2758094/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:2393523/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:1490870/69‑1 (MQ=255)aaTACCGCCATTACCCGATGGACCAGCACCACTGTCTCAATGCGCATTTCCGTGGTGCGATCAAAACCa < 1:156445/69‑1 (MQ=255) tACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGa > 1:842809/1‑69 (MQ=255) ccACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGcaacaa > 1:1261007/1‑69 (MQ=255) ccACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGcaacaa > 1:2761735/1‑69 (MQ=255) tctcGATGCGCATTTCCGTGGTGCGGTCAAAACCa < 1:3385662/35‑1 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGc > 1:387007/3‑66 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:2189712/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:395204/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:390171/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:1661839/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:652/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:1237648/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:481498/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:3226876/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:2956849/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:1462493/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:280329/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:2214000/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:520867/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:1914636/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:907139/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:1968924/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:2488755/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:196919/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:2370810/3‑67 (MQ=255) caaTGCGCATTTCCGTGGTGCGATCAAAACCAGATACCAGCTGATCAAGCCCGGCAACAAACTGGCt > 1:1614491/3‑67 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGAc > 1:1818002/1‑59 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACa > 1:2907663/1‑60 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACa > 1:1418012/1‑60 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACa > 1:2340030/1‑60 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACa > 1:2665768/1‑60 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACa > 1:1884907/1‑60 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGac > 1:169605/1‑69 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGac > 1:649190/1‑69 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGac > 1:1235025/1‑69 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGac > 1:761797/1‑69 (MQ=255) tCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGac > 1:2284958/1‑69 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:832267/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:640613/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:1019945/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:534655/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:462992/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:3406964/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:3395031/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:3327939/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:3021768/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:2945437/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:2795371/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:2661363/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:2535423/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:1492151/68‑1 (MQ=255) gtggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:1704726/68‑1 (MQ=255) tggtgCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGacac < 1:2128502/67‑1 (MQ=255) | AATACCGCCATTACCCGATGGACCAGTACCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGATACCAGTTGATCAAGCCCGGCAACAAACTGGCTGACATCCGCTGACAC > minE/828813‑828931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |