Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	minE	876,315	C→T	60.9%	L511L (CTG→TTG)	acnA →	aconitate hydratase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	minE	876,315	0	C	T	60.9%	42.9 / 62.4	92	L511L (CTG→TTG)	acnA	aconitate hydratase 1
Reads supporting (aligned to +/- strand):  ref base C (18/18);  new base T (48/8);  total (66/26)
Fisher's exact test for biased strand distribution p-value = 3.19e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGT  >  minE/876250‑876370                                                                  |                                                        tcGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGc                                                      >  1:3154823/1‑69 (MQ=255) tcGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGc                                                      >  1:216869/1‑69 (MQ=255) tcGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGc                                                      >  1:3055483/1‑69 (MQ=255) tcGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGc                                                      >  1:2153826/1‑69 (MQ=255) tcGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGc                                                      >  1:2385924/1‑69 (MQ=255) tcGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGc                                                      >  1:176844/1‑69 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:3160903/66‑1 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:1523588/66‑1 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:508288/66‑1 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:1390605/66‑1 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:2459569/66‑1 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:770327/66‑1 (MQ=255)     tgaACTGGGATTTAACCTTGTGGGATACGGTTGTACCACCTGTAATGGTAACTCTGGACCGTTGccc                                                    <  1:96470/66‑1 (MQ=255)         cTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCt                                              <  1:89091/69‑1 (MQ=255)         cTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCt                                              <  1:2589979/69‑1 (MQ=255)         cTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCt                                              <  1:584074/69‑1 (MQ=255)         cTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCt                                              <  1:2339486/69‑1 (MQ=255)         cTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCt                                              <  1:1252034/69‑1 (MQ=255)          tGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCt                                              <  1:1620482/68‑1 (MQ=255)              gTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGa                                         <  1:492048/69‑1 (MQ=255)              gTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGa                                         <  1:454357/69‑1 (MQ=255)              atttAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGccc                                                    <  1:2595299/57‑1 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:310782/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:3418605/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:2063224/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:2008468/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:3299373/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:404876/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:2678828/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaaa                         >  1:654070/1‑69 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCaaaaa                          >  1:1241410/1‑68 (MQ=255)                              tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGAAATCaaaaa                          >  1:946320/1‑68 (MQ=255)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTg                                                       >  1:33901/1‑37 (MQ=38)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATc                                                >  1:811965/1‑44 (MQ=38)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3186975/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3003853/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:2366439/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:2872510/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:2851663/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:2113067/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:724328/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:665941/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:660243/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1079950/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:113300/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1177817/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1246152/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1275133/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1436090/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:562030/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:540738/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:495975/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1730181/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:928558/1‑62 (MQ=39)                                cGGTTGTACCACCTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:828037/1‑62 (MQ=39)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGCTCCTATCGAAACGGCAATCa                              >  1:1356942/1‑53 (MQ=255)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTAt                                            >  1:1002736/1‑39 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1809379/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:751423/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:103253/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1046121/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1597839/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:561754/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1615779/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:53024/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1627793/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1678465/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3167986/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:462284/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:944108/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:1897336/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3431962/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:2110922/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:2242472/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3386191/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3327173/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3003784/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3294528/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3041285/1‑53 (MQ=38)                                         caccTGTATTGGTAACTCTGGACCGTTGCCCGATCCTATCGAAACGGCAATCa                              >  1:3231090/1‑53 (MQ=38)                                                 ttGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtg      >  1:1473666/1‑69 (MQ=255)                                                 ttGGTAACTCTGGGCAGCTGCCCGATCATATCGAAACGGCAATCAAAAAAGGCGATTTa                >  1:1567688/1‑59 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:967793/68‑1 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:3267904/68‑1 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:2328784/68‑1 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:1978440/68‑1 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:1410557/68‑1 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:1041502/68‑1 (MQ=255)                                                   ggTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:1015054/68‑1 (MQ=255)                                                   ggTAACTCTGAGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:2102750/68‑1 (MQ=255)                                                    gTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc     <  1:2946690/67‑1 (MQ=255)                                                      aaCTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgcggt  <  1:1845137/68‑1 (MQ=255)                                                                  |                                                        TCGACGAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGT  >  minE/876250‑876370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑