| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 904,059 | C→A | 48.0% | R10R (CGC→CGA) | ycjP → | predicted sugar transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 904,059 | 0 | C | A | 48.0% | 16.1 / 80.0 | 75 | R10R (CGC→CGA) | ycjP | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (24/15); new base A (19/17); total (43/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCT > minE/903999‑904124 | aTTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGtt > 1:626543/1‑68 (MQ=255)aTTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGtt > 1:1970961/1‑68 (MQ=255)aTTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGt < 1:1854982/67‑1 (MQ=255) ggTGAACCTCAATGTCAACAAATAAACGCACACTCAGTCGCATCGGtttt > 1:647657/1‑50 (MQ=255) ggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGtttt > 1:1526893/1‑50 (MQ=255) ggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGtttt > 1:1834867/1‑50 (MQ=255) ggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGtttt > 1:492016/1‑50 (MQ=255) ggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGtttt > 1:496042/1‑50 (MQ=255) aaCCTCAATGGCAACAAATAAAGGCACACTCAGTCGc > 1:2410185/1‑37 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGc > 1:989281/1‑37 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGc > 1:600858/1‑37 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGc > 1:3151112/1‑37 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGc > 1:2216102/1‑37 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGc > 1:2352726/1‑37 (MQ=255) aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGc > 1:163486/1‑37 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCt > 1:172485/1‑58 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt > 1:2447197/1‑60 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:656376/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt > 1:2205986/1‑60 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt > 1:2451087/1‑60 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt > 1:3029606/1‑60 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:2318117/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:3273051/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:334767/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:41532/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:454599/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:1815008/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:1582559/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt > 1:1525506/1‑60 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt < 1:1321280/60‑1 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGt > 1:1282128/1‑60 (MQ=255) cAATGGCAACAAATAAACGCACACTCAGTCGCATCGG‑TTTTACTGCGGGCTGGCGCTGt < 1:2274608/59‑1 (MQ=255) aaTGGCAACAAATAAACGCACACTCAGTCGCAGCGGTTTTTACTGCGGGCTGGCGCTGt < 1:1113140/59‑1 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:3011531/1‑69 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:988357/1‑69 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:495495/1‑69 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:1319965/1‑69 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:1461278/1‑69 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:2358225/1‑69 (MQ=255) gCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACg > 1:3274634/1‑69 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATGACGCTGt < 1:2194469/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:2798268/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:2038905/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:2596675/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:1631911/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:1085684/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:24437/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:1677337/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:1077505/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:2254150/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:197231/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:1268084/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:607885/68‑1 (MQ=255) aaaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCAACATCACGCTGt < 1:107798/68‑1 (MQ=255) aaTAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:2391445/67‑1 (MQ=255) tAAACGCACACTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:2138786/65‑1 (MQ=255) acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt < 1:2880855/69‑1 (MQ=255) acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt < 1:3001546/69‑1 (MQ=255) acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt < 1:2202703/69‑1 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGt < 1:180883/56‑1 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTcc > 1:1699206/1‑60 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:2330703/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:928682/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:76540/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:751379/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:1951516/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:1794232/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:1211635/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:2181551/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:1789873/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:1758546/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:2830527/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:1393771/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:391604/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:37842/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:163255/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:2714626/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:2971888/1‑69 (MQ=255) acTCAGTCGAATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt > 1:2913265/1‑69 (MQ=255) tCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCt > 1:1507114/1‑69 (MQ=255) tCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCt > 1:2768619/1‑69 (MQ=255) tCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCt > 1:1821865/1‑69 (MQ=255) | ATTCTGCTGACCAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCT > minE/903999‑904124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |