| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 910,465 | G→A | 71.5% | A126A (GCG→GCA) | ycjU → | predicted beta‑phosphoglucomutase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 910,465 | 0 | G | A | 71.5% | 23.2 / 8.8 | 28 | A126A (GCG→GCA) | ycjU | predicted beta‑phosphoglucomutase |
| Reads supporting (aligned to +/- strand): ref base G (3/5); new base A (18/2); total (21/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.47e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCACAGCAGATCTCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCAACTT > minE/910406‑910516 | gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:2036879/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:37557/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:3317679/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:3286040/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:3253909/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:323445/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:3167045/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:3047790/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:2996735/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:38560/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:1819036/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:1748484/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:1744622/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:1693819/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:157201/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:1221360/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:1175696/1‑69 (MQ=255)gCACAGCAGATTCCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCAGCGCTGGAg > 1:782169/1‑69 (MQ=255) tctcCCTGAATGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGa < 1:1219822/67‑1 (MQ=255) aaTGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCaa < 1:3160213/69‑1 (MQ=255) tGCTCCGACGATTTTAGCAGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGACGCTTCCCAAc < 1:2012022/68‑1 (MQ=255) tGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCaa < 1:101524/67‑1 (MQ=255) tGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCaa < 1:3047644/67‑1 (MQ=255) tGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCaa < 1:159540/67‑1 (MQ=255) tGCGCCGACGATTTTAGCAGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGACGCTTCCCAAc < 1:1913131/68‑1 (MQ=255) cgcCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCAACtt > 1:224940/1‑68 (MQ=255) cgcCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCAACtt > 1:2641166/1‑68 (MQ=255) cgcCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCAACtt > 1:1097591/1‑68 (MQ=255) | GCACAGCAGATCTCGGTTGGGCTGGCTTCTGTCTCCCTGAATGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGCGAGTTTTTCACCTTCTGCGCGGATGCTTCCCAACTT > minE/910406‑910516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |