| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 910,937 | C→T | 25.1% | G59G (GGC→GGT) | ycjV → | predicted sugar transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 910,937 | 0 | C | T | 25.1% | 118.2 / 32.8 | 95 | G59G (GGC→GGT) | ycjV | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (37/34); new base T (18/6); total (55/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.86e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
TCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAA > minE/910890‑910990 | tCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCaa > 1:815931/1‑68 (MQ=255)tCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCaa > 1:2076118/1‑68 (MQ=255)tCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCaa > 1:2588544/1‑68 (MQ=255)tCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCaa > 1:3096705/1‑68 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:1244326/69‑1 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:1286227/69‑1 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:3428678/69‑1 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:424757/69‑1 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:347193/69‑1 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:424207/69‑1 (MQ=255) gACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg < 1:422827/69‑1 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:2126451/1‑68 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:216658/1‑68 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:3317872/1‑68 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:3415156/1‑68 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:1559758/1‑68 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:139455/1‑68 (MQ=255) caccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:1121471/1‑68 (MQ=255) caccATGCGCATGATTGACGGGATTGAGGAGATCAGAGGCGGCGATCTGTTGATCGACGGCAAACgaa > 1:3037827/1‑68 (MQ=255) accCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatg < 1:3013393/69‑1 (MQ=255) cccTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatg < 1:1430811/68‑1 (MQ=255) cccTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatg < 1:2397327/68‑1 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACgaatgaat > 1:2941780/4‑66 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACgaatgaat > 1:2347645/4‑66 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:325250/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:611504/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:3421893/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:2975418/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:2784923/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:71076/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:596707/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:724218/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:976347/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:2662114/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:1031854/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:1071633/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:1193557/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:1720163/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:1947525/4‑69 (MQ=255) cgtaTGATTGCCGGGCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGAc > 1:195305/4‑69 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:3325030/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:581033/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:484350/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:412698/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:2119095/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:3113340/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:3089588/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:3049715/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:1976214/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:2087138/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:2274300/1‑62 (MQ=255) aTTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:2554427/1‑62 (MQ=255) aTTGACGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga > 1:2676724/1‑62 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACTAATGAATGACGTTCCAg > 1:2729791/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:1942916/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:429281/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:591024/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:2933323/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:707937/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:724063/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:734456/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:741906/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:2008045/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:832555/1‑68 (MQ=255) tGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAg > 1:891415/1‑68 (MQ=255) ggCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc < 1:1042202/60‑1 (MQ=255) ggCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc < 1:181498/60‑1 (MQ=255) ggCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc < 1:1660416/60‑1 (MQ=255) ggCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc < 1:2637312/60‑1 (MQ=255) ggCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc < 1:1905120/60‑1 (MQ=255) ggCTTGAGGAGATCAGCGGCGGTGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc < 1:2041495/60‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:1092183/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:1396786/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:470618/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:545725/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:1416224/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:158094/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:2009396/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:1778652/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:2609838/68‑1 (MQ=255) ggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa < 1:3288268/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatg < 1:1719764/42‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAgcaagcaa < 1:1850527/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:1000973/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:2722484/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:956672/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:949488/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:923968/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:880012/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:1833798/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:237873/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:218094/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:2479101/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:1458191/68‑1 (MQ=255) gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCaa < 1:2637975/68‑1 (MQ=255) | TCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAA > minE/910890‑910990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |