| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 977,525 | G→A | 18.3% | S540S (AGC→AGT) | dcp ← | dipeptidyl carboxypeptidase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 977,525 | 0 | G | A | 18.3% | 242.9 / 34.3 | 151 | S540S (AGC→AGT) | dcp | dipeptidyl carboxypeptidase II |
| Reads supporting (aligned to +/- strand): ref base G (84/39); new base A (21/7); total (105/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 151 total aligned reads displayed.
GCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAT > minE/977461‑977583 | gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:1984596/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:2042102/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:207932/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:3170036/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:2137584/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:526430/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:1130025/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:1589048/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:1554782/1‑69 (MQ=255)gCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTgg > 1:2654461/1‑69 (MQ=255) ccAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGc > 1:33531/1‑69 (MQ=255) ccAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGc > 1:1710027/1‑69 (MQ=255) ccAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGc > 1:453015/1‑69 (MQ=255) ccAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGc > 1:1195012/1‑69 (MQ=255) ccAGCGAATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGc > 1:443020/1‑69 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:2855824/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:134540/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:2798905/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:794457/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:1530517/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:2459495/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:2983953/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:2196852/69‑1 (MQ=255) aGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCAt < 1:2922640/69‑1 (MQ=255) tatCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCa < 1:59086/69‑1 (MQ=255) tatCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCa < 1:1019444/69‑1 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt < 1:2295023/56‑1 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:3092846/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt < 1:3305263/56‑1 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:2515075/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:335872/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:1026717/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:2516472/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:1806399/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt > 1:176029/1‑56 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCt < 1:1598574/56‑1 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAtt > 1:28339/1‑69 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAtt > 1:2729944/1‑69 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAtt > 1:1359952/1‑69 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAt > 1:3047058/1‑68 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAt > 1:410544/1‑68 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAt > 1:1090692/1‑68 (MQ=255) tCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCAt > 1:1642023/1‑68 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGc > 1:1173871/1‑57 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCa > 1:2319653/1‑58 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCa > 1:2015705/1‑58 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCa > 1:2049957/1‑58 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCa > 1:2102106/1‑58 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGc > 1:1078988/1‑69 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGc > 1:348859/1‑69 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGc > 1:2914876/1‑69 (MQ=255) gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCCGGCATTACGCATTTTCTGTTGc > 1:1577119/1‑69 (MQ=255) ttCGCTCATCTCTTACCCTTTGTTGAACAGGCTGGCATTACTCa < 1:476386/44‑1 (MQ=38) ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:3165033/69‑1 (MQ=255) ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:1267039/69‑1 (MQ=255) ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:632177/69‑1 (MQ=255) ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:3341267/69‑1 (MQ=255) ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:376365/69‑1 (MQ=255) ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:1152535/69‑1 (MQ=255) cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1786753/1‑64 (MQ=255) cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1379855/1‑64 (MQ=255) cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1507889/1‑64 (MQ=255) cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:3237462/1‑64 (MQ=255) cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:2686172/67‑1 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTGAGGCATtgc > 1:1060269/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:3201526/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:3223760/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1101073/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:596261/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1255391/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2750454/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1336297/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1541722/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2342984/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2340616/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:524421/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:733131/1‑69 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtg > 1:793010/1‑68 (MQ=255) gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtg > 1:1760342/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCATTTCGTCAGGCATTGCTGCCCCGctct > 1:2476270/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:753034/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2407031/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:1070059/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:3124243/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:1740445/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2577732/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2321485/1‑68 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctc > 1:824416/1‑67 (MQ=255) cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctat > 1:1101133/1‑66 (MQ=255) ccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTGGTCAGGCATTGCTGCCCCGCTCTg > 1:1961856/1‑68 (MQ=255) cTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGAt < 1:2152458/69‑1 (MQ=255) tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:2585276/1‑69 (MQ=255) tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:65144/1‑69 (MQ=255) tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:1544772/1‑69 (MQ=255) tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:2861823/1‑69 (MQ=255) tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:3201456/1‑69 (MQ=255) tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:3313959/62‑1 (MQ=255) tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:1935502/62‑1 (MQ=255) tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:1608971/62‑1 (MQ=255) tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:3297709/62‑1 (MQ=255) | GCCAGCGCATATCGAGAAGTGCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAT > minE/977461‑977583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |