Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 978,110 C→T 42.4% R345R (CGG→CGA) ‡ dcp ← dipeptidyl carboxypeptidase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE978,1100CT42.4% 7.0 / 21.2 33R345R (CGG→CGA) ‡dcpdipeptidyl carboxypeptidase II
Reads supporting (aligned to +/- strand):  ref base C (4/15);  new base T (12/2);  total (16/17)
Fisher's exact test for biased strand distribution p-value = 3.61e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGAT  >  minE/978042‑978178
                                                                    |                                                                    
tCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCccgc                                                                      <  1:1132394/69‑1 (MQ=255)
tCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCccgc                                                                      <  1:3276647/69‑1 (MQ=255)
tCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCccgc                                                                      <  1:3255404/69‑1 (MQ=255)
tCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCccgc                                                                      <  1:1355139/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:933006/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:3294473/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:2985986/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:2719899/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:2567613/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:2506737/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:2320811/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:1956657/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:1852563/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:1322632/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:1691452/69‑1 (MQ=255)
         acCGTGTTTAATTCAAAATATGGCTTGAGCTACGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:2645641/69‑1 (MQ=255)
               tttAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGc                                                        >  1:2251063/1‑68 (MQ=255)
               tttAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGc                                                        >  1:2790798/1‑68 (MQ=255)
                 tAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTTCCGCCGTACCTg                                                              >  1:2611139/1‑60 (MQ=255)
                   aTTCGAAATAAGGCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATaa                                                    <  1:1675591/68‑1 (MQ=255)
                   aTTCGAAATAAGGCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATaa                                                    <  1:531140/68‑1 (MQ=255)
                   aTTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCccgc                                                                      <  1:2887541/50‑1 (MQ=255)
                   aTTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATaa                                                    <  1:359857/68‑1 (MQ=255)
                   aTTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATaa                                                    <  1:1292093/68‑1 (MQ=255)
                      cAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATAAAATg                                                >  1:1117210/1‑69 (MQ=255)
                           tatGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGt                                                             <  1:667854/51‑1 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcg                                        >  1:1575012/1‑68 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:1249564/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:90394/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:534255/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:3397235/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:1203146/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:2575637/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:3246045/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:1633559/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:1607320/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:2801327/1‑69 (MQ=255)
                              ggCTTGAGCTGCGCTTCATCGAGATCGAATTTCTCACGTCTTACCTGCTCGGCATAAAATGCCCAGTcc                                        >  1:1554795/1‑69 (MQ=255)
                                                                    ccgTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGAt  <  1:2039223/69‑1 (MQ=255)
                                                                    |                                                                    
TCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGAT  >  minE/978042‑978178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: