| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,036,664 | T→C | 38.0% | A685A (GCT→GCC) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,036,664 | 0 | T | C | 38.0% | 39.0 / 30.1 | 50 | A685A (GCT→GCC) | rsxC | fused predicted 4Fe‑4S ferredoxin‑type protein |
| Reads supporting (aligned to +/- strand): ref base T (17/14); new base C (7/12); total (24/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
CGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCT > minE/1036600‑1036721 | cgcgcAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCg > 1:304309/1‑69 (MQ=255) ggAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:2869454/69‑1 (MQ=255) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:2802934/2‑67 (MQ=11) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:762483/2‑67 (MQ=11) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:2943849/2‑67 (MQ=11) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:2712753/2‑67 (MQ=11) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:2375354/2‑67 (MQ=11) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:2998915/2‑67 (MQ=11) aggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCcgt > 1:2280364/2‑67 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:2286288/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:2800153/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:2975563/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:2421909/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:2296654/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:3291422/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:2202809/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:427945/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:1227361/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:857537/69‑4 (MQ=11) ggCTAATGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:955797/69‑4 (MQ=11) tGCGGAGCCAGAAGAACAGATTGATCCGCGCAAAGCCGCTGTCGAAGCGGCTATTGCCcgtga < 1:752547/63‑4 (MQ=11) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa > 1:2889386/1‑68 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa > 1:3334150/1‑68 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCa > 1:748598/1‑68 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGAGGCTATTGCACGCGCCAAAGCa > 1:308637/1‑68 (MQ=255) ggAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:2009271/48‑1 (MQ=255) gAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:2862165/47‑1 (MQ=255) ccAGAAGAACAGATTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCGCGCAAg < 1:604434/69‑1 (MQ=255) ccAGAAGAACAGATTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCGCGCAAg < 1:378281/69‑1 (MQ=255) ccAGAAGAACAGATTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCGCGCAAg < 1:2541943/69‑1 (MQ=255) ccAGAAGAACAGATTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCGCGCAAg < 1:2735994/69‑1 (MQ=255) ccAGAAGAACAGATTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCGCGCAAg < 1:2927672/69‑1 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:3222271/69‑1 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:1840138/69‑1 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCTGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:1491741/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:2267947/39‑1 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg > 1:3272631/1‑50 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:1220818/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:769768/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:1364305/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:693893/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:1046894/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:1980714/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:380630/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:2311160/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:231427/1‑68 (MQ=255) agaaCAGGTTGATACGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:3113409/1‑68 (MQ=255) gTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa < 1:3003422/69‑1 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt < 1:863412/69‑1 (MQ=255) aGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:1172886/47‑1 (MQ=255) | CGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCT > minE/1036600‑1036721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |